Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq80 100 3e-16 seq249 87.8 2e-12 >seq80 Length=2822622 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || ||||| || || ||||| ||||| ||||| | ||||| ||||| | Sbjct 766512 CAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCA 766571 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| ||||| | | || || |||| |||||||| || ||||| || |||| Sbjct 766572 CGTTCTCGATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGCGTTT 766631 Query 94992 TCACAAAGATCTGCATGCTT 95011 ||||||||||||||||| || Sbjct 766632 TCACAAAGATCTGCATGTTT 766651 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| ||||||| | || ||||| || || ||||| || || || || | Sbjct 742253 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGG 742312 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | |||||| | | || || || | |||||||| || Sbjct 742313 ATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTA 742372 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||||| || ||||||||||||||||||||| || Sbjct 742373 CCAGTTAGGGTTTTCACAAAGATCTGCATGTTT 742405 >seq249 Length=855460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 94844 GTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATA 94903 |||| | ||| |||||||| || || ||||||| | || ||||| || || || || Sbjct 398361 GTGTGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 398302 Query 94904 CCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCA 94963 ||||| || || | ||||| ||||| | | | | |||||| | | || || || Sbjct 398301 CCTTCCTTATCCTGGATTTTGGCCTTCAAGTTCTCAATGGTGTCACTGGGCTCAACCTCC 398242 Query 94964 ATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | |||||||| || ||||| || || || |||||||||||||||| Sbjct 398241 AGAGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATGC 398196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448250652060960