Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq119 178 2e-40 seq416 168 1e-37 seq57 163 4e-36 seq1457 161 2e-35 seq1443 156 7e-34 seq2489 134 2e-27 >seq119 Length=2113884 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | |||||| |||||||||||||| ||||||||||| ||||| Sbjct 56051 CGCGAAGCGTCACCGGAAAGTTCTTCGTGATAACATCCAAGGTATCACCAAGCCCGCTAT 55992 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || || |||||| | || || | |||| || |||| Sbjct 55991 CCGCCGTCTGGCCCGCCGTGGCGGTGTGAAGCGTATTTCCGGTCTAATCTACGAGGAGAC 55932 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | |||||| ||| ||| |||| ||| ||| | ||| || || Sbjct 55931 CCGTGGTGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGTGACGCTGTTACCTACACTGA 55872 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| ||||||| | || || || |||| | || || Sbjct 55871 GCACGCGAAGAGGAAGACTGTGACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 55812 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| ||| ||||| Sbjct 55811 TCGCACTCTGTATGGTTTCGGAGGTTAA 55784 >seq416 Length=342149 Score = 168 bits (186), Expect = 1e-37 Identities = 200/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| ||||||||||| || || || Sbjct 341902 CGCCAAGCGTCACCGTAAAGTTCTCCGCGATAACATCCAGGGAATCACCAAACCCGCCAT 341843 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| ||||| |||||| |||| || || |||| || |||| Sbjct 341842 CCGCCGTCTTGCTCGTCGTGGCGGAGTGAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 341783 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| | ||||| ||| ||| |||| ||| || || || ||||| Sbjct 341782 TCGCGGTGTGCTGAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACTTACACCGA 341723 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 341722 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCTCTGAAGAGACAGGG 341663 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || || ||||| || Sbjct 341662 CCGCACTCTGTACGGCTTCGGCGGTTAAACT 341632 >seq57 Length=3450883 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| || || |||| | ||| || ||||| |||||||| || || ||||| || || Sbjct 772826 CGCTAAACGGCACCGCAAAGTTCTCCGTGATAATATCCAAGGCATTACTAAGCCCGCCAT 772885 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||| ||||| || |||||| |||| || || | || || |||| Sbjct 772886 TCGTCGTCTAGCCCGTCGCGGTGGTGTGAAGCGTATCTCCGGCCTGATTTACGAGGAGAC 772945 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | || || ||| ||| |||| ||||| || ||| ||||| Sbjct 772946 CCGTGGTGTACTTAAGGTGTTTCTGGAGAACGTAATCCGCGATGCAGTCACCTACACCGA 773005 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| | |||||| | || ||||| | ||| | || || Sbjct 773006 GCACGCCAAGAGAAAGACTGTGACCGCAATGGATGTGGTGTATGCTCTTAAAAGGCAGGG 773065 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || ||||| ||| ||||| Sbjct 773066 CCGTACTCTATACGGTTTCGGAGGTTAA 773093 >seq1457 Length=11176 Score = 161 bits (178), Expect = 2e-35 Identities = 199/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||||| ||||||||||| || ||||| ||||||||||| Sbjct 797 CGCAAAGCGTCACCGTAAGGTGCTTCGTGATAACATCCAGGGCATCACTAAGCCAGCTAT 856 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| |||||||| || |||||| | ||||| || |||| || |||| Sbjct 857 CCGCCGCCTGGCTCGCCGTGGTGGTGTGAAGCGTATTTCTGGGCTGATCTACGAGGAGAC 916 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||||| | || || ||| ||| |||| || || | ||| ||||| Sbjct 917 CCGTGGCGTGTTGAAGGTGTTTCTGGAGAACGTCATCCGCGACGCCGTAACCTACACCGA 976 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| |||||||| | || || || | || | || || Sbjct 977 GCACGCCAAGAGAAAGACCGTCACTGCCATGGATGTGGTGTACGCTCTCAAGAGACAGGG 1036 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||| | | || || ||||| ||||| ||| Sbjct 1037 CCGCACTCTGTACGGCTTTGGTGGTTAAGCTT 1068 >seq1443 Length=11314 Score = 156 bits (172), Expect = 7e-34 Identities = 181/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| |||||||||||||| || |||||||| |||||||| || Sbjct 1167 GATAACATCCAGGGCATCACTAAGCCAGCTATCCGCCGCCTGGCTCGCCGTGGTGGTGTG 1226 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| || |||| || |||| |||| || |||||| | || || || Sbjct 1227 AAGCGTATTTCTGGTCTGATCTACGAGGAGACCCGTGGCGTGTTGAAGGTGTTTCTGGAG 1286 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || || ||| ||||||||| | || | ||||| |||||| || Sbjct 1287 AACGTCATCCGCGACGCCGTCACCTACACCGAGCACACCAAGAGAAAGACCGTCACCGCC 1346 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || | || | || ||||| | | || || ||||| ||||| Sbjct 1347 ATGGATGTGGTGTACGCTCTCAAGAGACAGGGCCGCACTCTGTACGGCTTTGGTGGTTAA 1406 Query 16700 TCTT 16703 ||| Sbjct 1407 GCTT 1410 >seq2489 Length=5603 Score = 134 bits (148), Expect = 2e-27 Identities = 194/274 (71%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| || |||||||| || || || Sbjct 5243 CGCAAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAACCCGCCAT 5184 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| | |||| |||||| |||| | || ||||||| |||| Sbjct 5183 CCGCCGTCTGGCTCGCC------GAGTGAAGCGTATCTCCAGTCTGATCTATGAGGAGAC 5130 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| ||| || || | | || || Sbjct 5129 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGTGACGCCGTCACCCACACGGA 5070 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 | |||| || | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 5069 GAACGCCAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 5010 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || || || || ||||| || || Sbjct 5009 CCGCACTCTGTACGGCTTGGGCGGTTAAACTCCT 4976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068584074548