Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq29 122 6e-23 seq15 114 9e-21 seq289 98.7 7e-16 >seq29 Length=4831287 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| ||||||||||| ||||||||| |||||||| Sbjct 3054850 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATACCAAAAACG 3054791 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 3054790 ATCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 3054731 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || |||||||||||| || || || ||||| || || || || Sbjct 3054730 TCATCAGAAAATTTGTGCTGTGTGCCGAGTGTGACAACCCTGAAACTGATCT 3054679 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| |||||||| |||||||||||||||| || ||||| || |||||||| Sbjct 190107 AAGCCCGTTTCCTTGGCTCTGGTTTCGCTAGATAGCAGCTAGGGATAGTGGGAATCTCGT 190048 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| ||| |||||||||||| || Sbjct 190047 TCATCCATTCATGCGTGTCTCTAATTAGATGATGA 190013 >seq15 Length=6148218 Score = 114 bits (126), Expect = 9e-21 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||||| Sbjct 723821 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGCTAGGGACAGTGGGAATCTCGT 723762 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||||| |||||||||| |||||| Sbjct 723761 TCATCCATTCATGCGTGTCACTAATTTGATGAC 723729 >seq289 Length=654003 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 110836 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGTCTATCGGTCTCGT 110895 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 110896 GCCGGTATTTAGCCTTA 110912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334917661425116