Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq117 414 1e-110 seq64 105 8e-18 >seq117 Length=2128962 Score = 414 bits (458), Expect = 1e-110 Identities = 1266/1947 (65%), Gaps = 29/1947 (1%) Strand=Plus/Plus Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 876794 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 876853 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 876854 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 876913 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308 | ||||| || || |||| || || || || || || || ||||| || | || || Sbjct 876914 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 876973 Query 62309 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62368 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 876974 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 877033 Query 62369 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 62426 |||| || | | | || ||||| || ||||| | ||| | Sbjct 877034 TCCGTTGG--CGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGC 877091 Query 62427 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 62486 || |||| || || || | || || | || | || || ||||| || || || Sbjct 877092 CTTCATACGTCTCATAGGTGCCGAGCTCGGCGGCCAACTCGCAGCTCGCTTCCAAAGCGG 877151 Query 62487 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATG 62546 | ||||| || || || ||||||| | || || ||| || || |||| ||||| | Sbjct 877152 CATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGG 877211 Query 62547 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62606 ||||| | || || || || || || ||||| || || || || || || || || | Sbjct 877212 GATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGT 877271 Query 62607 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62666 | | | | || || | |||||| | || || || || || || |||| || | Sbjct 877272 GCCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGT 877331 Query 62667 TGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAAT---CG 62721 | | || ||||||||||||||| ||| || | || ||| ||| ||| | || Sbjct 877332 TCAAGTTCCTGACAATTACTTTGGTCACGGATGC--CAATTTTTTAAAGTCATAAGTCCG 877389 Query 62722 CCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62781 | || | || ||||||| | || ||||| |||||||| ||||| || ||||| | Sbjct 877390 CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTC 877449 Query 62782 AGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 62836 | | | || |||| | || || ||||| || || || ||||||||||| || Sbjct 877450 --CTTGC---TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCC 877504 Query 62837 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 62896 | ||| || || || ||||| |||| || ||||| || || | ||| | || || || Sbjct 877505 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCG 877564 Query 62897 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTT 62955 ||||| |||| || || || || || | ||| | | || ||||||| | | | || Sbjct 877565 GTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCTGCT-GAGCCTTCACCACACGCTT 877623 Query 62956 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63015 ||| || | || ||| || || | | ||| ||||| || ||||| | Sbjct 877624 CACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 877683 Query 63016 GTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63075 ||||| || || || || |||||||||||| ||||| ||| ||| | || ||| || Sbjct 877684 ATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCG 877743 Query 63076 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63135 ||||| ||||| ||||| ||||| || || || || || |||| || || ||||| Sbjct 877744 CTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTC 877803 Query 63136 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63195 ||||| || ||||| || || || ||||| | | | ||| | ||||| || |||| Sbjct 877804 CTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAG 877863 Query 63196 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63255 ||| ||||| | | ||||| | |||||| || |||||||| | || | || ||||| Sbjct 877864 GTACATGGCGAAGGCGCCAGGTCTTTTGTTCCCCCCCTGATCAACATAACGCGCTGTGTT 877923 Query 63256 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315 || ||||| ||||||||||| | | || ||||| || ||||| || | ||| || Sbjct 877924 GTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTA 877983 Query 63316 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 ||| || ||| | ||| || | || | || || || || || ||| ||||| Sbjct 877984 GCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGAT 878043 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | ||||| | || | ||| || ||||| ||||| || || |||||| ||||| || Sbjct 878044 GAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAG 878103 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63495 || || ||||| |||| || | | | ||||| ||||| || | ||| || || || Sbjct 878104 CAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGC 878163 Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63555 ||| || ||||| || || || || || ||||| ||||| || ||| || |||||| Sbjct 878164 GTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGT 878223 Query 63556 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63615 || ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 878224 CCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 878283 Query 63616 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63675 || || || | || |||||| |||| ||| || || ||||| ||||||| || || Sbjct 878284 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 878343 Query 63676 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 63735 |||| || || || || ||||||| || || || | | ||| | || | Sbjct 878344 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCGAG 878403 Query 63736 GGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTA--GGATTGACATAGTTGAAT 63793 || | ||||| || ||| | || | | || | || |||| |||||| | Sbjct 878404 TGTGTCTTTCGAAATCAT-GGAGGA-GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTAC 878461 Query 63794 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853 | |||||||| || || || || | || || || |||||||| | || || ||||| Sbjct 878462 AGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGGCG 878521 Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 63913 || | || || || ||||| || || || | | || || |||||| || || || Sbjct 878522 ATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCTCC 878581 Query 63914 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTC 63973 || ||||| ||||| | || || || || || || | || | || ||||| |||||| Sbjct 878582 GCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTC 878641 Query 63974 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AAT 64032 || | || | || || | | || |||| | || || || || |||| || Sbjct 878642 ATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGGAT 878700 Query 64033 ACGAGATGTGATTTTATCAAACATGAC 64059 |||||||||||||| || |||||||| Sbjct 878701 GCGAGATGTGATTTTGTCGAACATGAC 878727 >seq64 Length=3290765 Score = 105 bits (116), Expect = 8e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| ||||| ||||| || | |||||||| || | ||||| |||||||||||| || Sbjct 2550731 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGATTACTCTTTCTG 2550672 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 || || |||||||| |||| ||| |||| ||||||||||| |||| || || || || Sbjct 2550671 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 2550612 Query 62921 GCTTTCCA 62928 || | ||| Sbjct 2550611 GCGTACCA 2550604 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || || | ||||||||||||||||| ||||| || || || || | ||| Sbjct 2549585 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 2549526 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 2549525 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 2549466 Query 63587 ATGTGCTGAGGTC 63599 |||||||| |||| Sbjct 2549465 ATGTGCTGGGGTC 2549453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633574687985600