Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq117 111 3e-19 seq44 98.7 2e-15 seq14 95.1 2e-14 seq298 93.3 9e-14 seq2135 91.5 3e-13 seq536 91.5 3e-13 seq209 91.5 3e-13 seq8 91.5 3e-13 seq561 89.7 1e-12 seq559 89.7 1e-12 seq61 89.7 1e-12 seq114 87.8 4e-12 seq31 86.0 1e-11 >seq117 Length=2128962 Score = 111 bits (122), Expect = 3e-19 Identities = 238/353 (67%), Gaps = 2/353 (1%) Strand=Plus/Plus Query 293907 CTCCTCCTTCGAGGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCCTTGATGGTGCC 293966 ||| ||||| ||||||||||| || || | |||||||| |||| |||||||||||| Sbjct 877444 CTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCC 877503 Query 293967 CGCATTAGACTGCATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACATATGGCATACC 294026 | ||| ||| || |||| ||| ||||||| || | || ||| | || Sbjct 877504 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCC 877563 Query 294027 CGTTTCAATCTGAGTGGTGACCATGGTGTTCCAGACATCGCGAGCCTTCACCACGCGCTT 294086 ||||| |||| | || || | | ||| | | ||||||||||||| ||||| Sbjct 877564 GGTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCTGCTGAGCCTTCACCACACGCTT 877623 Query 294087 TGCCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATC 294146 || ||||||| |||||| ||||||| || ||||| | |||| || | || Sbjct 877624 CACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 877683 Query 294147 AGACAGGCCAGGGCACTCGTGAGGGTCA-AGTAGAGACCACTGGGCATCAGTCTCCACGC 294205 | ||| || ||||| ||| | || || | || ||||| | | | ||||||| | Sbjct 877684 ATCCAGCCCGGGGCAGTCG-GCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCC 877742 Query 294206 GCTTCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGC 294258 |||||||||| || ||| || ||||| ||||| |||| || | ||| ||| Sbjct 877743 GCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGC 877795 >seq44 Length=4005143 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3176909 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3176968 Query 142564 CCCACATCGGGCAGAAGTC 142582 ||||| | |||| |||||| Sbjct 3176969 CCCACGTTGGGCGGAAGTC 3176987 >seq14 Length=6472706 Score = 95.1 bits (104), Expect = 2e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 142494 TGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGT 142553 ||||| | ||||||| |||||||||||||||||| ||||||||||||| |||||| Sbjct 6114518 TGGTGCTACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGT 6114577 Query 142554 GGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||| | |||| Sbjct 6114578 GGGTTCGAGCCCCACGTTGGGC 6114599 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 6107898 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 6107957 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 6107958 CCCCACGTTGGGCGGA 6107973 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 6109831 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 6109890 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 6109891 CCCCACGTTGGGCGGA 6109906 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1889149 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1889090 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1889089 CCCCACGTTGGGC 1889077 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 6117511 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 6117570 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 6117571 CCCCACGTTGGGC 6117583 >seq298 Length=606534 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 502 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 561 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 562 GCCCCACGTTGGGC 575 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 122788 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 122847 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 122848 GCCCCACGTTGGGC 122861 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1925 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1866 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1865 CCCCACGTTGGGC 1853 >seq2135 Length=6869 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 4809 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4868 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 4869 CCCCACGTTGGGC 4881 Score = 89.7 bits (98), Expect = 1e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 142494 TGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGT 142553 ||||| | ||||||| |||||||||||||||||| ||||||||||||| |||||| Sbjct 1816 TGGTGCTACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGT 1875 Query 142554 GGGTTCGAGCCCCACATCGGGC 142575 ||||| ||||||||| | |||| Sbjct 1876 GGGTTTGAGCCCCACGTTGGGC 1897 >seq536 Length=177441 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 29964 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 29905 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 29904 CCCCACGTTGGGC 29892 >seq209 Length=1107661 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 618486 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 618545 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 618546 CCCCACGTTGGGC 618558 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||| Sbjct 629086 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTTGAG 629027 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 629026 CCCCACGTTGGGC 629014 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 631119 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 631060 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 631059 CCCCACGTTGGGC 631047 >seq8 Length=7322812 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 4125090 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4125149 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 4125150 CCCCACGTTGGGC 4125162 >seq561 Length=158974 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 59395 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 59454 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 59455 CCCACGTTGGGC 59466 >seq559 Length=159612 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 38490 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 38549 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 38550 CCCACGTTGGGC 38561 >seq61 Length=3353517 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1669965 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1669906 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1669905 CCCACGTTGGGC 1669894 >seq114 Length=2148459 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 368696 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 368754 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 368755 TCGAGTCCCGGCAGAGA 368771 >seq31 Length=4741157 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 355835 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 355894 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 355895 TCCCGGCAGAGA 355906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027741507965476