Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq249 122 2e-22 seq80 102 2e-16 seq48 87.8 3e-12 >seq249 Length=855460 Score = 122 bits (134), Expect = 2e-22 Identities = 140/187 (75%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 68276 TTGGA-TGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGA 68334 ||||| |||| || || ||||| || |||||||| | |||||| || || || || | Sbjct 398384 TTGGAGTGTTGTAGTCAGAGAGGGTGTGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCA 398325 Query 68335 GTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGA 68394 | || || ||||| || || ||||||||||| || || || || ||||| | | ||| | Sbjct 398324 GCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATTTTGGCCTTCAAGTTCTCAA 398265 Query 68395 TGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454 ||||||| | || || |||| |||||||| || || |||||||||||||| || | Sbjct 398264 TGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGA 398205 Query 68455 TCTGCAT 68461 ||||||| Sbjct 398204 TCTGCAT 398198 >seq80 Length=2822622 Score = 102 bits (112), Expect = 2e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || || || || ||||| || ||||||||||||||||| || || || ||||| Sbjct 766511 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTC 766570 Query 68385 ACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGT 68443 ||| |||||||||||| ||| | || || || | ||||||||| || || ||||| || Sbjct 766571 ACGTTCTCGATGGTGTC-GCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGCGT 766629 Query 68444 CTTGACGAATATCTGCAT 68461 || || || |||||||| Sbjct 766630 TTTCACAAAGATCTGCAT 766647 >seq48 Length=3648740 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| |||||| | |||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 3226404 CATCACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 3226345 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 ||||| ||| ||||||||||||||| |||||||| Sbjct 3226344 CAGGGAGATGTTCTCCATGAAGTCAAAAGGGTTCTC 3226309 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| |||||| | |||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 3234826 CATCACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 3234885 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 ||||| ||| ||||||||||||||| |||||||| Sbjct 3234886 CAGGGAGATGTTCTCCATGAAGTCAAAAGGGTTCTC 3234921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921539039253920