Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq117 504 1e-137 seq48 132 9e-26 seq64 105 1e-17 seq28 84.2 4e-11 >seq117 Length=2128962 Score = 504 bits (558), Expect = 1e-137 Identities = 1082/1597 (68%), Gaps = 50/1597 (3%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC- 244068 ||||| |||| |||| |||||| | ||| | || |||||||||||| | ||| Sbjct 876770 GAGCCATTGTTAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCC---CTCTCT 876826 Query 244069 --CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 ||| | | || |||||| ||| || | ||||||||| ||||| ||||| ||||| Sbjct 876827 GTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGG 876886 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| |||||| || | ||||||| ||| |||||||||| ||||| || ||| Sbjct 876887 GTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 876946 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || |||| |||||| |||||||||||||| || | ||| Sbjct 876947 GAGGCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTC 877006 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||||| | ||| | |||| | |||||||| Sbjct 877007 TCCTTCAGCAGCTTCCAGTCCCACAGGTCCGT-------TGGCGTCTTCT--CCCACATG 877057 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | ||||| || || || ||| || || ||| |||| ||| | Sbjct 877058 TCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCGA-G 877116 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC-- 244423 | | | ||||| || |||||| | || | ||||| || || || ||||| |||||| Sbjct 877117 CTCGGCGGCCAACTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTG 877176 Query 244424 -ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGA 244481 || ||| || | | |||| | || | || ||||| | ||| | |||||| Sbjct 877177 GATGTTGAGCAGTT---GAGCCTCGGGGCTT-TCAAAGGGATAACGCATAAGGATGAAGG 877232 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 | || |||| |||||| || ||||| || || || ||||| ||| |||| || | | ||| Sbjct 877233 CATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGCCGCATGTTCGACCTCCTGG 877292 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TG 244600 |||| ||| ||||| ||||| |||||| |||||||| | ||| | | || | | Sbjct 877293 CTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTT 877352 Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | ||| |||| | |||||| || || | ||| | | || Sbjct 877353 TGGTC-ACGGATGCCAATTTTTTAAAGTCATAA--GTCCG----CTCAGGGGTG------ 877399 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 || || |||||| ||||| |||||| ||||| || |||||||| ||| | | Sbjct 877400 ---ACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTA 877456 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| ||| || || ||||||||||| |||||||||||||||||||| | ||| || Sbjct 877457 GTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGG 877516 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| ||||||||| || ||||||| |||| | ||| |||||| || ||| Sbjct 877517 TTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGC 877576 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT 244900 | ||| || | ||| || | | |||||| ||| | || | ||||| Sbjct 877577 GACTCGATGATTGCATACCAAAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCC 877636 Query 244901 GCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG 244960 ||| || | |||||| || | || ||||| |||||| ||| || || |||||| Sbjct 877637 TTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGG 877696 Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 || ||||| ||||| || ||| || || || || |||| || |||||||||| Sbjct 877697 CAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGG 877756 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080 || |||||||| ||||| | ||| |||||||||| | |||||| ||| || |||||| Sbjct 877757 TCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTC 877816 Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140 ||| ||||||||| |||||||| || |||| |||||||||||||| ||| | |||| | Sbjct 877817 TTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAG 877876 Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGC 245200 ||||| || | ||||| || ||||| || || | | | |||| | | | | Sbjct 877877 GCGCCAGGTCTTTTGTTCCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTC 877936 Query 245201 AGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCC 245260 | | || || | ||||| || |||||||||||| ||||||| ||| || Sbjct 877937 AACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGAT 877996 Query 245261 CTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTC 245320 || | | ||||| | || ||| | || || || ||||||||||||||||| | Sbjct 877997 CTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGC 878056 Query 245321 TTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAG 245380 || | ||||| || ||||| |||||||| ||||||| |||||| |||||| | Sbjct 878057 TTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTG 878116 Query 245381 GACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAG 245440 |||||||| ||| || | | | | ||||| || || ||| ||||||||| || | Sbjct 878117 GACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCA- 878175 Query 245441 CGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGT-TGTCGCCGTGGATCT 245498 | ||| || || | ||| |||| || | || ||||| | ||| |||||||| Sbjct 878176 CTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTC-CCGTGGATTC 878234 Query 245499 GCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTC-GAT-GGGTCCCTCGGGTCCCTT 245556 || || ||||||||| ||||||| || ||| | | | || | | ||| Sbjct 878235 CCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTGAT--CTT 878292 Query 245557 GAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 |||| |||||||||||| || |||||||| |||||| Sbjct 878293 TAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAG 878329 >seq48 Length=3648740 Score = 132 bits (146), Expect = 9e-26 Identities = 107/127 (84%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || ||||| |||||||||||||| | |||||| ||||||||| Sbjct 3225377 TGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCT 3225436 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 3225437 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 3225495 Query 42825 GACGAGG 42831 ||||||| Sbjct 3225496 GACGAGG 3225502 Score = 132 bits (146), Expect = 9e-26 Identities = 107/127 (84%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || ||||| |||||||||||||| | |||||| ||||||||| Sbjct 3235853 TGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCT 3235794 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 3235793 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 3235735 Query 42825 GACGAGG 42831 ||||||| Sbjct 3235734 GACGAGG 3235728 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| |||||| |||| ||| | ||||||||||| ||||||||||||||| Sbjct 3225191 CTGTTCAATGCCATCGAGACGCTGCCGTGCGTGAAGAAGAAGGCTGACTGGGCGCTCAAC 3225250 Query 42669 TGGATCG 42675 ||||||| Sbjct 3225251 TGGATCG 3225257 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 ||||| || ||||| |||||| |||| ||| | ||||||||||| ||||||||||||||| Sbjct 3236039 CTGTTTAATGCCATCGAGACGCTGCCGTGCGTGAAGAAGAAGGCTGACTGGGCGCTCAAC 3235980 Query 42669 TGGATCG 42675 ||||||| Sbjct 3235979 TGGATCG 3235973 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| || ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 3226314 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 3226373 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 3226374 GGTGGGCGAGTACCAG 3226389 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| || ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 3234916 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 3234857 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 3234856 GGTGGGCGAGTACCAG 3234841 >seq64 Length=3290765 Score = 105 bits (116), Expect = 1e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||||||||||||| || ||||| | ||| ||||| ||||||| || | |||||| Sbjct 2551715 CACCTGAAACTCTCCTGAAAGCACCCTGCGGGTGTAGATGTTGCTGGTGTATGCCTCGAT 2551656 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | ||| | |||||||| ||||| || ||| || || ||||| || |||| ||||| Sbjct 2551655 GGACTCATTATTGCCCAGGATCTGGGCAGTGGATGCTGTGGGCATTGGGGACAAAAGCAG 2551596 Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATG 244243 || |||||||| || ||||| ||||| Sbjct 2551595 GCTATTCCTCACACCATGCCTGAGGATG 2551568 >seq28 Length=5070235 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || | || || ||| | || || || |||||||||||||| || | || || Sbjct 3408802 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCT 3408861 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | |||| |||||| ||| ||| || | ||||| || || | || ||| ||||| ||| Sbjct 3408862 GCTATCTACTGGCTGAAGAAGAGGGGGCTAATGCCTGGCCTTAGCTACTCCAACGAGCTC 3408921 Query 42816 ATCAGCAGGGACGAGG 42831 || |||||||| |||| Sbjct 3408922 ATTAGCAGGGATGAGG 3408937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944253784519360