Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq117 176 5e-39 seq48 91.5 2e-13 seq64 84.2 3e-11 seq28 84.2 3e-11 >seq117 Length=2128962 Score = 176 bits (194), Expect = 5e-39 Identities = 882/1382 (64%), Gaps = 26/1382 (2%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| |||||||||||| Sbjct 876890 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 876949 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || | || || |||||||| | | || | || || ||| Sbjct 876950 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 877009 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 || || | |||||| | | | ||| | | || |||||| || ||||||| Sbjct 877010 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGA 877069 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 || || | | ||||| || ||| | ||||| || | ||| | | ||||| Sbjct 877070 ATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCGAGCTCGGCGGCCAAC 877129 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 ||| ||||||| || | || || | |||||| |||||||| || | || | || Sbjct 877130 TCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGA--GCA 877187 Query 114242 -TTG-GCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCT 114298 ||| |||||| | ||||| | || ||| || || || |||| || | || Sbjct 877188 GTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAGGCATCAGCCAATCCC 877246 Query 114299 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 114358 ||||| |||| || || || | || | ||| || ||| | | || ||||| || Sbjct 877247 TGGACCCCGATTCCTATCGGCCTGTGCCGCATGTTCGACCTCCTGGCTTCTTCCACCGGG 877306 Query 114359 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 114418 || | || | ||||||||| | || | || || | || || || | ||| Sbjct 877307 TAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG-ATGC 877365 Query 114419 AGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 |||| || ||| || | || ||| |||| ||| | || |||| || Sbjct 877366 CAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAGA 877422 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 |||||||| || || | ||| ||||| ||||||||| | |||||||| || | Sbjct 877423 GGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAG 877482 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 || | ||| |||||||||| |||| || || ||| |||| || ||||| || Sbjct 877483 GTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTT 877542 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT- 114656 ||| | |||||| |||||||| || || || || |||| || || || | ||| | | Sbjct 877543 GTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCTG 877602 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | | | || || || || | | |||||||| ||| || | |||||||| ||| Sbjct 877603 CTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTT 877661 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 114776 ||||||| || ||| | ||| ||||| || | | || || | || |||| Sbjct 877662 CAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACC 877721 Query 114777 ATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGA 114836 | | | | ||| || ||||||||||||||||| |||||||| || || |||| | Sbjct 877722 AGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACA 877781 Query 114837 GATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 114895 | |||| || ||| || | | ||| || || || ||||| ||||| | Sbjct 877782 GGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCAAAC 877840 Query 114896 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAGC 114951 | ||| |||||| || |||||||||| |||| | || ||| | || | Sbjct 877841 ACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCAGGTCTTTTGTTCCCCC-C 877899 Query 114952 CTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGA 115011 ||| | ||||| | ||||||| || | || | | |||||| | || || | || Sbjct 877900 CTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGA 877959 Query 115012 TTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCATGGATGTGCATA 115069 ||| || || || || | ||| ||| | || | || || || Sbjct 877960 ACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGC-TGACTGC-CACG 878017 Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 ||||| || || || | || ||||| | ||||| | | | || || |||||||||| Sbjct 878018 CCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCC 878077 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 ||||| |||| |||| | |||| ||||||||||| |||| || ||||| || Sbjct 878078 TCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTT 878137 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTA 115248 ||||| ||||||||||| || | |||||| ||||| || | | |||| | | ||| Sbjct 878138 CCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTA 878196 Query 115249 GGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 115308 |||||| | ||| || || || |||||| || || | | |||| ||| | ||| Sbjct 878197 GGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCAT 878256 Query 115309 GT 115310 || Sbjct 878257 GT 878258 >seq48 Length=3648740 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 3225502 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3225443 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| |||||| || || || ||||||||||||||||| ||||||||| Sbjct 3225442 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 3225393 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 3235728 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3235787 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| |||||| || || || ||||||||||||||||| ||||||||| Sbjct 3235788 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 3235837 >seq64 Length=3290765 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 114556 |||||| || |||||||||| || || || |||| ||| || | | | |||||| Sbjct 2550756 CTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATT--TGATGGTG 2550699 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 |||| ||| | ||||| |||| |||| || ||||||||||||| ||||||||| || Sbjct 2550698 CCCAGGTTTTGCTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTA 2550639 Query 114617 CCCGTCTCCGTTTGGGACT 114635 || || || || || |||| Sbjct 2550638 CCAGTTTCTGTCTGCGACT 2550620 >seq28 Length=5070235 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 126080 ATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 126139 ||||| || || ||| ||| || || ||||| || |||| |||||||| |||| | || Sbjct 3408923 ATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCTTCAGCCAGTAGATA 3408864 Query 126140 GCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| ||||||||| ||||||||||| || |||||| Sbjct 3408863 GCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 3408828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597299569366880