Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq117 102 7e-17 >seq117 Length=2128962 Score = 102 bits (112), Expect = 7e-17 Identities = 455/715 (64%), Gaps = 13/715 (2%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 |||||||| |||||||||||| |||||||||| |||||||||||||| | ||| ||| Sbjct 877569 GAAACCGGGACGCCGTACATGGTCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAG 877510 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATAC---AGCGAT 123722 || |||| || || || || || || || ||| | ||||| |||| ||| ||| | Sbjct 877509 AATCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAAATCGTCGAGTACACTAGCAAG 877450 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAAC 123782 | || | ||||| || || ||| |||| || | | || | |||| Sbjct 877449 GACG---AGGTGGCGGTTTGCAATCTGGCCTCTGTCGCTCTCAACATGTACGTCACCCCT 877393 Query 123783 G-GCG--CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTG 123839 | ||| ||| | | || ||| | | | | || ||| | || | ||| ||| Sbjct 877392 GAGCGGACTTATGACTTTAAAAAATTGGCATCCGTGACCAAAGTAATTGTCAGGAACTTG 877333 Query 123840 AACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAA 123899 ||||| ||||||| | || | || || |||| ||||| | ||| || || Sbjct 877332 AACAAGGTTATCGACATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTCGAACATGCGG 877273 Query 123900 CACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATG 123959 ||||| ||| | ||| | || | || || ||||| || || || | | |||| Sbjct 877272 CACAGGCCGATAGGAATCGGGGTCCAGGGATTGGCTGATGCCTTCATCCTTATGCGTTAT 877213 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019 || | |||||| ||| || | |||| || | || || || || || ||||| Sbjct 877212 CCCTTTGAAAGCCCCGAGGCTCAACTGCTCAACATCCAGATCTTTGAGACTATGTATTAT 877153 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 | ||||||||| ||||||||||| | || | |||| | || || | || | Sbjct 877152 GCCGCTTTGGAAGCGAGCTGCGAGTTGGCCGCCGAGCTCGGCACCTATGAGACGTATGAA 877093 Query 124080 GGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAAT 124139 ||| |||| ||| || ||| | ||||||||||||||| | || || || | Sbjct 877092 GGCTCGCCGGTGAGTAAGGGCATTCTCCAGTACGACATGTGGGAGAAGACGCCAACGGAC 877033 Query 124140 TTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGC 124197 |||||||||||| | | || | | | |||| | || || || | ||| | Sbjct 877032 CTGTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAACATGGCGTGAGGAACAGCC 876975 Query 124198 TGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCT 124257 || || || | ||||| ||||| |||| || || || | || |||||||| ||| Sbjct 876974 TGCTGCTGTCCCCAATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCA 876915 Query 124258 TCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCA 124312 ||||| | | ||| | ||| | ||| || || ||| | | || || ||||| Sbjct 876914 TCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCA 876860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451962316310560