Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq50 113 7e-20 seq2 93.3 6e-14 seq127 89.7 7e-13 >seq50 Length=3533640 Score = 113 bits (124), Expect = 7e-20 Identities = 183/260 (70%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| ||||||||||| | |||||||| || || | | | || ||||||| | | | Sbjct 1494661 CCGTCCGGCAATCTGATTGGTGAACGACTCCACCAGGTTGCTGATGCCGTGCTCGGTCAC 1494602 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 || || ||||| | || || || | ||| | || | | || | ||| | ||| Sbjct 1494601 GACAGAGGTGTTGAAGACAAACTGCTTGTAGCTGTAATCTGTCTCCTCAATGTGGAAACT 1494542 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||| |||| ||||| |||||| |||| ||||| |||||||| | || || |||||||| Sbjct 1494541 ATCGGGCATCAGAGGGTGCCAGTGGTAAAGGGTGTTGAACTCAGATGCGATGCGGTTCTG 1494482 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| || || | ||| |||||||| | || | |||||| || Sbjct 1494481 GTACTGGAAGCGCTGGT--TAAAGAGCAGCTCGGGGTCAAACTTGAGTTTGAAGTGATAG 1494424 Query 9670 CCGCTGAGTTGCTGGACATA 9689 ||||| || ||||| || || Sbjct 1494423 CCGCTCAGATGCTGCACGTA 1494404 Score = 109 bits (120), Expect = 8e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || || | ||| || || || || |||||||||||||| ||||||||| || Sbjct 1495731 GCGGTGTTGACCACGTCGAAGCCGACTGTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 1495672 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| || | || || || || | ||| || |||||||||| ||| | Sbjct 1495671 GGGGAGCAGATGGGATTTCCGATTAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACC 1495612 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || | || || |||||| | | | || || || || | | ||| | |||||| Sbjct 1495611 ATTGTTTCCCCAAAGATGCCGTTATGTCTGGGCTTCTCCACCAGCAGGCCCGGGTAGAGC 1495552 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| ||||||| || || || | |||| | | || || || || ||||| ||| Sbjct 1495551 TCCACAGCATCGACGTGCCCGTACAGCTCCTCCAGCACCGCGGCCATTTCTTTCTCCCCT 1495492 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 9964 ACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGTT 10023 |||||||| |||| ||| ||||||||||| || | |||||| |||||||| |||| | Sbjct 1493688 ACCTGATATTTCAGCTTGCCATCCTTGAAGAGTCTCAGCTTGTGCTGCTTTTCCAGGTTG 1493629 Query 10024 TCGCCGTAGATGTGACTGAGATCGACCTG 10052 || ||||||||||| |||| || ||||| Sbjct 1493628 TCACCGTAGATGTGGTTGAGGTCCACCTG 1493600 >seq2 Length=10686569 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || || || || || || || | || || ||||||||||| |||||||| |||| ||| Sbjct 6168549 TTTACTATTTCAAAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAG 6168608 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || || ||| ||| ||| ||||| | ||| || || || |||| ||| | ||||| Sbjct 6168609 CATATAGGGTTTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTT 6168668 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 ||||| || ||||| || | || | ||| || | | ||||| | ||| | ||| | Sbjct 6168669 TCACCAAATATGGCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGT 6168728 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 || || | ||| | ||||| |||| | || |||||||||| Sbjct 6168729 GCGTCAATGTCATCGTAGAGCTCTTCGAGGTCTCGTGCTATCTCCT 6168774 >seq127 Length=1908066 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || ||||||||||| |||||||| | || |||||||| ||| | | || Sbjct 1792558 TCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTTCCAAGCAGG 1792617 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 ||||||| ||||| ||||| |||| ||| | |||||||| || || ||||| ||| Sbjct 1792618 CCTTTCAGTGAAAAGGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATGGCTTTAGGA 1792677 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142 || ||| || | || | ||| | ||| | || | || || | ||| |||||||| Sbjct 1792678 CGGATTTTCTCAAGCATTATGCCTGGGTAAAACTCCAGGGCGTCTATGTCACCATAGAGC 1792737 Query 9143 GCTTCCAA--CTCGGCAGCTATCTC 9165 |||| || ||||| ||||| || Sbjct 1792738 TCTTCTAAACCTCGG--GCTATTTC 1792760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723662538802400