Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq117 185 1e-41 seq48 86.0 8e-12 seq28 84.2 3e-11 >seq117 Length=2128962 Score = 185 bits (204), Expect = 1e-41 Identities = 835/1298 (64%), Gaps = 28/1298 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 876890 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 876949 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || | || || |||||||| | | || || ||| Sbjct 876950 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 877009 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 || || | |||||| | | | ||| | | ||||||||| || ||||||| Sbjct 877010 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGA 877069 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 || || | | | ||||| || ||| | |||||||| | ||| | | ||||| Sbjct 877070 ATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCGAGCTCGGCGGCCAAC 877129 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 ||| ||||||| || | || || | |||||| |||||||| || | || | || Sbjct 877130 TCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGA--GCA 877187 Query 116203 -TTG-GCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCT 116259 ||| |||||| | ||||| | || | ||| || || || |||| || | || Sbjct 877188 GTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAGGCATCAGCCAATCCC 877246 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 116319 ||||| |||| || || || | || | ||| || ||| | | || ||||| || Sbjct 877247 TGGACCCCGATTCCTATCGGCCTGTGCCGCATGTTCGACCTCCTGGCTTCTTCCACCGGG 877306 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || | ||||||||| | || | || || | || || || | ||| Sbjct 877307 TAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG-ATGC 877365 Query 116380 AGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 116438 |||| || ||| || | || ||| |||| ||| | || |||| || Sbjct 877366 CAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAGA 877422 Query 116439 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 116498 |||||||| || || | ||| ||||| ||||||||| | |||||||| || | Sbjct 877423 GGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAG 877482 Query 116499 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 116558 || | ||| |||||||||| |||| || || ||| |||| || ||||| || Sbjct 877483 GTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTT 877542 Query 116559 GTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACAT- 116617 ||||| ||| || |||||||| || || || || |||| || || || | ||| | | Sbjct 877543 GTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCTG 877602 Query 116618 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCT 116677 | | | || || || || | | |||||||| ||| || | |||||||| | | Sbjct 877603 CTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTT 877661 Query 116678 CAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGAC 116736 ||||||| || ||| |||| ||| ||||| || | | ||||| | || ||| Sbjct 877662 CAAACTCCTCCCCC-CAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGAC 877720 Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796 || | | | ||| |||||||||||||||||||| |||||||| || || |||| Sbjct 877721 CAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAC 877780 Query 116797 AGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 116855 || |||| || ||| || | | ||| || || || ||||| ||||| | Sbjct 877781 AGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCAAA 877839 Query 116856 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGACCAG 116911 | ||| |||||| || |||||||||| |||| | || ||| | || Sbjct 877840 CACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCAGGTCTTTTGTTCCCCC- 877898 Query 116912 CCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAG 116971 |||| | ||||| | ||| || ||| | || | | |||||| | || || | | Sbjct 877899 CCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGG 877958 Query 116972 ATTGGCCATTTGTCCCC-CGAATACGAGACTTGTTGGCTCTGA--CATCGTGGATGTGCA 117028 | ||| || || || ||| | | || || ||| | || | || || || Sbjct 877959 AACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGT-GGATCTAATGCAGC-TGACTGC-CA 878015 Query 117029 TACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCC 117088 ||||| || || || | || ||||| | ||||| | | | || || ||||||||| Sbjct 878016 CGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCC 878075 Query 117089 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 117148 | ||||| |||| |||| | |||| ||||||||||| |||| || ||||| | Sbjct 878076 CCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGG 878135 Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 | ||||| ||||||||||| || | |||||| ||||| Sbjct 878136 TTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC 878173 >seq48 Length=3648740 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 3225502 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3225443 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| |||||| || || || || || ||||||||||||||||||||| Sbjct 3225442 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 3225393 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 3235728 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3235787 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| |||||| || || || || || ||||||||||||||||||||| Sbjct 3235788 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 3235837 >seq28 Length=5070235 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 127553 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 127612 ||||| || || ||| ||| || || ||||| || |||| |||||||| |||| | || Sbjct 3408923 ATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCTTCAGCCAGTAGATA 3408864 Query 127613 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| |||||| |||||||||||||| || |||||| Sbjct 3408863 GCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 3408828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613451708273760