Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq48 111 2e-19 seq28 95.1 1e-14 seq80 89.7 5e-13 >seq48 Length=3648740 Score = 111 bits (122), Expect = 2e-19 Identities = 101/126 (80%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || || ||||||||||||||||||||||| || ||||||| |||||| Sbjct 3224879 GCTC-ACCAGGTTCTCATTGACGATGCCGTCGCTGGCGGCAAAGAAGGCCAACACGTGGG 3224821 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | |||||| | ||| |||| | ||||||| || |||||||||||| | Sbjct 3224820 AGATGAAGTAGCGCTCTTCGTCCTTCATGGCATCCCAGTGCTGCAGGTCCTTGGACAGAT 3224761 Query 133394 CCACCT 133399 |||||| Sbjct 3224760 CCACCT 3224755 Score = 111 bits (122), Expect = 2e-19 Identities = 101/126 (80%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || || ||||||||||||||||||||||| || ||||||| |||||| Sbjct 3236351 GCTC-ACCAGGTTCTCATTGACGATGCCGTCGCTGGCGGCAAAGAAGGCCAACACGTGGG 3236409 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | |||||| | ||| |||| | ||||||| || |||||||||||| | Sbjct 3236410 AGATGAAGTAGCGCTCTTCGTCCTTCATGGCATCCCAGTGCTGCAGGTCCTTGGACAGAT 3236469 Query 133394 CCACCT 133399 |||||| Sbjct 3236470 CCACCT 3236475 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| |||||| ||| |||| ||||||||| ||||| | || | Sbjct 3225502 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3225443 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||||||||| ||||| ||||||| ||||| || || || || | Sbjct 3225442 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 3225383 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| |||||| || Sbjct 3225382 CCACCACGCGCTCTCC 3225367 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| |||||| ||| |||| ||||||||| ||||| | || | Sbjct 3235728 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3235787 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||||||||| ||||| ||||||| ||||| || || || || | Sbjct 3235788 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 3235847 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| |||||| || Sbjct 3235848 CCACCACGCGCTCTCC 3235863 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||| || |||||| || ||||| | ||||||||||||||| || || Sbjct 3236160 GTACGTGTCGATCAGCAGGCTATACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAA 3236219 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||||| || ||||| ||||| ||||||||||| || ||| ||||| ||| Sbjct 3236220 ACCGTAGAAACACCGGGCCTCCGTTACCTGCACTTCCTGCATGAAGCGCTCCACC 3236274 >seq28 Length=5070235 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCG 133453 |||||||||| |||||||| || || |||| ||| | ||||||||| |||| ||||| Sbjct 3406834 CCACCTCCTCCACGGTCCAGAAAGAGGCCTGGGCCTGTTTGTACATCTTCCAGATGTCTC 3406775 Query 133454 AATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 || || ||||||||||| |||||||| | |||||| || || | ||| || || Sbjct 3406774 GGTACTGGATGGGAAAAATGACAAACCGCCTGGGGTTCTCTCGGAGCAGAGGTTC 3406720 >seq80 Length=2822622 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || ||||||||||| ||||| ||||||||| | || || ||| | Sbjct 766651 AAACATGCAGATCTTTGTGAAAACGCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCC 766592 Query 38300 CACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || ||||| | | | |||| | || | ||||||| ||||| || || |||||| | | Sbjct 766591 CAGCGACACCATCGAGAACG-TGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTG 766533 Query 38359 ACCAACAGCGGCTCAT 38374 |||| ||| |||| || Sbjct 766532 ACCAGCAGAGGCTGAT 766517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500127559370240