Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq117 140 4e-28 seq48 87.8 2e-12 seq28 84.2 3e-11 >seq117 Length=2128962 Score = 140 bits (154), Expect = 4e-28 Identities = 936/1485 (63%), Gaps = 30/1485 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||| |||| || | || ||||| ||| ||||| || | || Sbjct 878265 CCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCACGGGACGGATATCGAAGCAGTC 878206 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || | |||| | || ||||| |||||| | || |||||||| Sbjct 878205 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCTT 878147 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| ||||| || || || || ||||||| || ||||| | || | ||||| || Sbjct 878146 CAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGA 878087 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 ||| | || || |||| ||| || | | || |||| ||||| || | ||||| Sbjct 878086 CAGCATCGAGGGGATCTACGACACGCTGAAGCATTGCGCCCTCATCTCCAAATCAGCTGG 878027 Query 111851 TGGTATCGGGATGCACATCCATGATG--TCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 || || || || || || | || | ||| ||| | || || || Sbjct 878026 AGGGATTGGCGTGG-CAGTCA-GCTGCATTAGATCCACGGGGAGCTACATCGCCGGCACC 877969 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || | || | | |||||| | | || | ||| ||||||||| ||| Sbjct 877968 AACGGCTGTTCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTAT 877909 Query 111969 GTAAACCAAGCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 || | || | ||| | ||| || | |||| | || || ||||| ||||| Sbjct 877908 GTTGATCAGGGGGGGAA-CAAAAGACCTGGCGCCTTCGCCATGTACCTGGAGCCCTGGCA 877850 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 | ||| | | || ||||| ||| || ||| || | |||||| ||| Sbjct 877849 CTTCGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAGC 877790 Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 | | || || |||| ||| || ||||| || || |||||||||||| | || ||| | | Sbjct 877789 CAGGGACCTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACAA 877730 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTG 112203 | | ||||| || | ||||| | | | ||||| || || ||| | ||| | Sbjct 877729 CGAAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGAGTGCTG-GGGGG 877671 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACGGTG 112262 |||||||||||| |||||||| | || ||| | || | ||| || ||| |||| Sbjct 877670 AGGAGTTTGAAGAACTCTACACCAGATATGAGAAGGAGGGGAGGGTGA-AGCGTGTGGTG 877612 Query 112263 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 ||| | | ||| | || || || |||| || || || || || || || || Sbjct 877611 AAGGCTCAGCAGCTTTGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTAC 877552 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||| | |||||||| ||||| ||| ||||| || || ||||| |||| |||||| Sbjct 877551 ATGGTCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAG 877492 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 | ||||||||| || |||||| | || | || ||| || ||| ||| || || Sbjct 877491 TGCAGCAACCTCTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCGGTTTGC 877432 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 112502 || || || || |||||||| || ||| || || ||| ||| | ||| | | Sbjct 877431 AATCTGGCCTCTGTCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTATGACTTT 877375 Query 112503 GAAAAACTCCACGAAGTTACGAA---AACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 ||||| | || || || || |||| | ||| | |||| ||||| || Sbjct 877374 AAAAAATTGGCATCCGTGACCAAAGTAATTGTC---AGGAACTTGAACAAGGTTATCGAC 877318 Query 112560 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 | || | ||||| || || || | | || || ||| | ||| | || || || Sbjct 877317 ATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTCGAACATGCGGCACAGGCCGATAGGA 877258 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 112679 |||| ||||| || | || |||| ||||| ||| || | | ||||| | | Sbjct 877257 ATCGGGGTCCAGGGATTGGCTGATGCCTTCATCCTTATGCGTTATCCCTTTGAAAGCCCC 877198 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || || | |||| | || |||||||| |||||| | |||||| | || ||| Sbjct 877197 GAGGCTCAACTGCTCAACATCCAGATCTTTGAGACTATGTATTATGCCGCTTTGGAAGCG 877138 Query 112740 AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 112799 || | |||||||| | | || | ||||| || | ||| || || || | | Sbjct 877137 AGCTGCGAGTTGGCCGCCGAGCTCGGCACCTATGAGACGTATGAAGGCTCGCC-GGTGAG 877079 Query 112800 CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGG 112857 ||||| | || || | || ||||||| || || |||| | | | |||| || Sbjct 877078 TAAGGGCATTCTCCAGTACGACATGTGGG-AGAAGACGCCAACGGACCTGTGGGACT-GG 877021 Query 112858 ACGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 112916 | ||| || ||||| ||| | | || | | ||||| || || || | ||| Sbjct 877020 AAGCTGCTGAAGGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTGCTGTCCCCA 876961 Query 112917 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 112976 ||||| || ||||||||||| || ||| |||| || || || | | | || ||||||| Sbjct 876960 ATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACA 876901 Query 112977 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTC 113036 | |||||||| | | ||| |||| |||||| ||| |||||| || || Sbjct 876900 AGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAACCCCCACCTG 876841 Query 113037 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 | | ||||| | ||||| || || ||| |||| |||||| Sbjct 876840 CTCAAAGACCTGACAGAGAGGGGCCTGTGGAATGAGGAGATGAAG 876796 >seq48 Length=3648740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || ||||| ||| ||||| ||||||||||| ||||| ||| ||| || | ||||| Sbjct 3225382 GCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGGCTG 3225441 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 3225442 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 3225501 Query 102312 G 102312 | Sbjct 3225502 G 3225502 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || ||||| ||| ||||| ||||||||||| ||||| ||| ||| || | ||||| Sbjct 3235848 GCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGGCTG 3235789 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 3235788 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 3235729 Query 102312 G 102312 | Sbjct 3235728 G 3235728 >seq28 Length=5070235 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCT 102250 || ||||| ||| || || ||||||||||||||||| || ||| ||||| || ||||| Sbjct 3408817 GCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATT-TGCTGCTATCTACTGGCT 3408875 Query 102251 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 |||||| | || || ||||| || || ||| |||||||||||| || Sbjct 3408876 GAAGAAGAGGGGGCTAATGCCTGGCCTTAGCTACTCCAACGAGCTCAT 3408923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620686253849920