Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq117 201 1e-46 seq28 91.5 2e-13 seq64 82.4 9e-11 >seq117 Length=2128962 Score = 201 bits (222), Expect = 1e-46 Identities = 953/1487 (64%), Gaps = 48/1487 (3%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| ||| || || ||| | || || |||| || || |||||| Sbjct 876796 CTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGAC 876855 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||| |||| ||| | | |||||||| | ||||||| || | Sbjct 876856 GATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGAT 876915 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| || |||||||| | || || || Sbjct 876916 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGCAG 876975 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 106080 ||||| | | || | || ||| ||||| || | | |||||| | | Sbjct 876976 GCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 877035 Query 106081 C-TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCT 106139 | |||| || || ||||||| || | || || | || | | || || || | Sbjct 877036 CGTTGGCGTCTTCT-CCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTT 877094 Query 106140 CAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGT 106199 || | |||||||||| || | | | ||||| || |||||||| |||| | || | Sbjct 877095 CATACGTCTCATAGGTGCCGAGCTCGGCGGCCAACTCGCAGCTCGCTTCCAAAGCGGCAT 877154 Query 106200 GATACATGGTTTCAAAGATACG-------AGCA-TTCATCTCCTTGGCTTCATCTGAATC 106251 |||||| || |||||||| | |||| || | | | ||||| || Sbjct 877155 AATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTT--------TC 877206 Query 106252 AAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAG 106310 ||| | || || || || || || |||| || | || || || || | || || | Sbjct 877207 AAAGGGATAACG-CATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCG 877265 Query 106311 GTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGA 106370 | ||||| ||||| || ||| | | || || || || || | || |||| || | Sbjct 877266 GCCTGTGCCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAA 877325 Query 106371 CTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC--ATGA-AGTTTTTCATAATCAA 106427 | ||| | || || ||||| | || | | ||| | ||||| | | ||| Sbjct 877326 CCTTGTTCAAGTTCCTG---ACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCAT 877382 Query 106428 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 106487 |||| || ||| |||| ||| | || |||| || |||| ||||||||| | Sbjct 877383 AAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCG 877439 Query 106488 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCG 106547 || ||| ||||| |||||||| | ||||| || || | |||| | ||| || | Sbjct 877440 CCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGG 877499 Query 106548 TCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 106607 | |||| ||||| ||||| ||||| ||||||| ||||| ||||||| |||||| |||| Sbjct 877500 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCG 877559 Query 106608 TCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATG 106666 |||| || || ||||| |||| || ||||| | ||| | | | | | || || Sbjct 877560 TCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCTGCTGAGCCTTCACCACAC 877619 Query 106667 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 106726 || || ||| |||||| ||| || | |||||||| ||||||||||||| ||| | Sbjct 877620 GC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCC-CA 877677 Query 106727 GCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTC 106785 || || || || || | | | ||||| | || ||||| | | | ||| Sbjct 877678 GCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTC 877737 Query 106786 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGC 106845 |||||||||||||| ||||| || |||||||||| | || || || || || Sbjct 877738 CACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTG 877797 Query 106846 CTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATG 106904 ||| || | || ||| || | | ||| ||||| || | | ||| |||||| | Sbjct 877798 CTCCTCCTTTCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGG 877856 Query 106905 GCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGC 106960 |||| || || | |||| | || |||| | ||| | |||| ||||| ||| Sbjct 877857 GCTCCAGGTACATGGCGAAGGCGCCAGGTCTTTTG-TTCCCCCCCTGATCAACATAACGC 877915 Query 106961 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 107020 |||||| ||| | || | | |||||| | | || | || || || || || Sbjct 877916 GCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCG 877975 Query 107021 CGAATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCC 107077 || || | ||| ||| | || | || || || ||||| || ||||| Sbjct 877976 GCGAT-GTAGCTCCCCGTGGATCTAATGCAGC-TGACTG-CCACGCCAATCCCTCCAGCT 878032 Query 107078 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 107137 | || ||||| | || || | | | || || | ||||| || | ||| ||| ||| Sbjct 878033 GATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCC 878092 Query 107138 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGG 107197 || |||||| |||||||| ||||||| |||||| || || ||||||||||||||| Sbjct 878093 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGG 878152 Query 107198 GTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGA 107256 || || | ||||| ||||| || | | |||| | || ||| ||||| | ||| | Sbjct 878153 GTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGC 878211 Query 107257 ATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || || || ||||||||| || | ||||| | ||| | ||||| Sbjct 878212 TTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGT 878258 >seq28 Length=5070235 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| || || || ||| ||| ||||| ||||| || |||| ||||| Sbjct 3408937 CCTCATCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCT 3408878 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| ||| || ||||| ||| ||||| || ||||||||||| || |||||| ||||| Sbjct 3408877 TCAGCCAGTAGATAGCAGCA-AATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAA 3408819 Query 117412 GCAAAAAGGCGCTC 117425 || | || ||||| Sbjct 3408818 GCCACAATCCGCTC 3408805 >seq64 Length=3290765 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || |||||||||| || ||||| |||| ||| || || || || Sbjct 2550756 CTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCC 2550697 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || || | || ||||||||| ||||||| ||||||||||| | |||||| || || || Sbjct 2550696 CAGGTTTTGCTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTACC 2550637 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 || || ||||| |||| | || || | ||||| Sbjct 2550636 AGTTTCTGTCTGCGACTCAATGATGGCGTACCACA 2550602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589927436236640