Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq49 172 4e-37 seq508 111 1e-18 seq410 91.5 1e-12 >seq49 Length=3574795 Score = 172 bits (190), Expect = 4e-37 Identities = 445/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971 || ||||| || || || || | || || | || || | ||||| | | ||||| | Sbjct 155529 ACAGCTTGTGAGAGGGCAAAGAGGACCT-TATCCTCCAGCACTCAGGCAAGCATTGAGAT 155471 Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031 || || | |||||||||||||||| | | || | || | ||||| ||||| || Sbjct 155470 TGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCCATCACAAGGGCACGTTTTGAGGA 155411 Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091 | || ||||| || || |||| ||| ||||| || ||| | ||| | Sbjct 155410 GCTCAACTCAGATCTTTTCAGGGGAACACTTGGCCCAGTTGAGAAAGCCCTGCAGGATGC 155351 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | |||||||||| | ||||||||||| || |||||||| || ||||||||||| Sbjct 155350 CAAGCTGGATAAATCCAGGATTCATGAAATTGTCCTGGTTGGTGGCTCCACAAGAATTCC 155291 Query 552152 TAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 ||||| | | | ||| || ||| ||| ||||| ||| | | || | || ||| Sbjct 155290 CAAAATCCAGAAGCTCTTACAGGACTTCTTT-AATGGCAAAGACCTGAACAAGAGCATTA 155232 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAA 552270 | |||||||| ||||| ||||| ||||| ||| | |||||||| || || || | | Sbjct 155231 ACCCAGATGAAGCTGTAGCCTACGGTGCAGCAGTCCAAGCAGCCATCCTCATGGGCGACA 155172 Query 552271 CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330 | || || | ||| || | | || | ||||| |||| || ||||| || | | Sbjct 155171 CCTCAGAGAATGTCCAAGATCTGCTGCTGCTGGATGTCGCTCCCCTGTCTCTGGGCATTG 155112 Query 552331 AAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAA 552390 |||| | || ||| ||||||| ||| || | |||| || || || || || Sbjct 155111 AAACCGCAGGCGGTGTTATGACACCTCTGATAAAGCGAAACACCACAATCCCCACAAAGC 155052 Query 552391 AATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTG 552450 | ||| | || || || || |||||||| || | | ||| ||||| | |||| Sbjct 155051 AGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGTGTATTGATTCAGGTATTTG 154992 Query 552451 AAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTA 552510 |||| || ||| | || ||| || || | || || | ||| | | ||||| Sbjct 154991 AAGGCGAGAGAGCCATGACCAAATGCAACAACCTTCTGGGCAAATTTGACCTCACAGGTA 154932 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | ||||| ||||| || || || || || || || || || || ||||| |||||||| | Sbjct 154931 TCCCTCCAGCTCCCCGAGGTGTTCCACAGATAGAGGTAACATTTGATATTGATGCCAACG 154872 Query 552571 GAATTTTGAATGT 552583 | ||| | ||||| Sbjct 154871 GCATTCTAAATGT 154859 >seq508 Length=196674 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || ||||| || || || || || || |||||||| || ||||||| Sbjct 147515 ATGCAGTCATCACAGTTCCAGCTTACTTCAACGATTCCCAGCGTCAAGCCACCAAAGATG 147574 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| |||||||| || || || |||||||| ||||||||||| || Sbjct 147575 CTGGGGCCATCTCTGGCCTTAATGTACTGCGCATCATCAATGAGCCTACTGCTGCAGCTA 147634 Query 550518 TTGCATATGGACTTGATAA 550536 |||| |||||||| || || Sbjct 147635 TTGCTTATGGACTGGACAA 147653 >seq410 Length=341553 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 |||||||| | ||| | ||||| ||| | || ||||| || ||||||||||| Sbjct 155775 ATGTCAAAGGGACCAGCAGTTGGTATTGATCTTGGGACCACCTACTCCTGTGTTGGTGTG 155834 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | || |||| ||||||||||||||||||||||| || || ||||| || || || | Sbjct 155835 TTCCAGCATGGCAAAGTTGAAATTATTGCCAATGACCAGGGCAACAGGACCACACCCAGT 155894 Query 550097 TATGTTTCTTTCACGGAAACTGA 550119 ||||| | ||||| || ||||| Sbjct 155895 TATGTGGCCTTCACAGATACTGA 155917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028913327685640