Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq117 226 5e-54 seq48 132 9e-26 seq28 111 3e-19 >seq117 Length=2128962 Score = 226 bits (250), Expect = 5e-54 Identities = 798/1224 (65%), Gaps = 42/1224 (3%) Strand=Plus/Plus Query 221432 TAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGAAGGGCAT 221490 || || |||||||||||| ||||||| | ||| |||||||| | | || || || Sbjct 877157 TACATAGTCTCAAAGATCTGGATGTTGAG-CAGTTGAGCCTCGGG-GCTTTCAAAGGGAT 877214 Query 221491 A-CGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTC 221549 | |||| | ||| | || |||| |||||| || ||||| || || |||||||| | Sbjct 877215 AACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGCC 877274 Query 221550 TCCTGTTGGAAGCGGCC--GCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTT 221607 | |||| || | || |||||| ||| || || |||||| |||||| | ||||| Sbjct 877275 GCATGTTCGA--CCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTT 877332 Query 221608 GAGGTTCAGAGTGATGACTTTAACCACCTCGGTCA--GCTTCTGGTGATTGAACACCAAC 221665 | |||| |||| || || | ||||| | | | | || || || Sbjct 877333 CAAGTTCC------TGAC---AATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATA 877383 Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 |||| || |||||| | | | | || || || || |||||| || || Sbjct 877384 AGTCCGC--TC----AGGGGTGACGTACATG--TTGAGAGCGACAGAGGCCAGATTGCAA 877435 Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 || ||||||||||||||| | || |||| | ||| || || |||||||||||||||||| Sbjct 877436 ACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTG 877495 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845 ||||| ||||| | | || || ||| | ||| || || ||||||| ||| | Sbjct 877496 ATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTAC 877555 Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCAC 221904 || || || || ||| | | | | || | ||| || | ||| || |||| Sbjct 877556 GGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCTG-CTGAGCCTTCAC 877614 Query 221905 CGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTC 221964 | | ||| || ||||| ||| ||||| | ||| ||||| ||||||| || Sbjct 877615 CACACGCTTCACCCTCCCCTC---CTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTC 877671 Query 221965 ACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTT 222024 || | ||| ||||| || || || ||| ||||||||||| ||||| | ||| Sbjct 877672 CCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTT 877731 Query 222025 GTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGT 222084 || | |||| || |||||||||||| ||||||||||| || | || || || |||| Sbjct 877732 GTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGC 877791 Query 222085 CCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTG 222144 |||||||||||| || |||| ||| |||| |||| || ||||| | || ||| Sbjct 877792 TCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTG 877851 Query 222145 CCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCAT 222204 ||| |||||||| || | ||| | ||||| |||| ||||| || |||||||| || Sbjct 877852 CCAGGGCTCCAGGTACATGGCGAAGGCGCCAGGTCTTTTGTTCCCCCCCTGATCAACATA 877911 Query 222205 CCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGT 222264 | | | |||| | | | | | || || || |||||||| | |||||||| Sbjct 877912 ACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGT 877971 Query 222265 GCCCTTAATGTA-CGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGG 222323 ||| ||||| | | ||| || || | | ||| | | || ||| || || || | Sbjct 877972 GCCGGCGATGTAGCTCCCCG-TGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAG 878030 Query 222324 CGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCT 222383 | ||| ||||| | |||||| ||| || ||||| ||| ||||| || ||| | Sbjct 878031 CTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCAT 878090 Query 222384 CCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACA 222443 |||| | | ||||| || || |||| ||| | || ||| | || || || | Sbjct 878091 CCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGA 878150 Query 222444 GCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTC 222503 | || || |||||| || || | | |||| ||| | ||| ||||| | |||| Sbjct 878151 GGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTG 878210 Query 222504 TGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCT 222563 |||| | |||||| || || || |||||| ||||| ||| || | || Sbjct 878211 CTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCT 878270 Query 222564 ---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAA 222620 | || || || || || |||||||| || |||||||||||||| |||| Sbjct 878271 CAGCTACTTTGCCATT-GATCT--TTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAA 878327 Query 222621 AGTAGTTG-AGGTCAAAGTCTCTG 222643 || ||||| ||| ||| |||||| Sbjct 878328 AGAAGTTGTAGGAGAAA-TCTCTG 878350 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 221036 GAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCC 221095 ||||| ||||| | | |||| | | |||||| || |||| || ||||||||| | Sbjct 876770 GAGCCATTGTTAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTC 876829 Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 || | |||| || ||| ||| || | || || || ||||||||||||| | | Sbjct 876830 AGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTG 876889 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 || | ||| ||| | | |||||| ||||||||||||||||||||| || ||| | Sbjct 876890 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 876949 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTT 221247 || |||||||| || | || |||||| ||||| Sbjct 876950 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTT 876981 >seq48 Length=3648740 Score = 132 bits (146), Expect = 9e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||||||||| ||||| ||| |||||||| || Sbjct 3225367 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 3225426 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 3225427 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 3225486 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 3225487 ATCAGCAGAGACGAGG 3225502 Score = 132 bits (146), Expect = 9e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||||||||| ||||| ||| |||||||| || Sbjct 3235863 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 3235804 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 3235803 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 3235744 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 3235743 ATCAGCAGAGACGAGG 3235728 >seq28 Length=5070235 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| | || || ||||| |||||||| |||||||| ||| ||||| ||||| Sbjct 3408802 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCT 3408861 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || |||| |||||| ||| ||| |||| ||||| || || || |||||||||||| Sbjct 3408862 GCTATCTACTGGCTGAAGAAGAGGGGGCTAATGCCTGGCCTTAGCTACTCCAACGAGCTC 3408921 Query 25993 ATCAGCAGGGACGAGG 26008 || |||||||| |||| Sbjct 3408922 ATTAGCAGGGATGAGG 3408937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928760785987840