Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq49 194 1e-43 seq508 111 1e-18 seq91 95.1 8e-14 >seq49 Length=3574795 Score = 194 bits (214), Expect = 1e-43 Identities = 375/546 (69%), Gaps = 8/546 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| |||||| | || || || || |||||| | |||| || |||| ||||| Sbjct 156303 ATTGGCATTGATCTGGGCACCACCTATTCTTGTGTTGGGGTTTTCCAGCATGGCAAAGTT 156244 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || |||||||| || || || |||||||| || ||| ||||| ||||||| || Sbjct 156243 GAGATCATTGCCAACGATCAGGGCAATAGAACCACTCCAAGCTATGTGGCTTTTACCGAC 156184 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || ||| ||||||||||||||||| || | |||| |||| || || ||| || Sbjct 156183 ACAGAAAGGCTTATTGGAGATGCTGCCAAGAACCAAGTTGCAATGAACCCCAATAACACA 156124 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTCCAATCTGA 474570 || |||||||| ||| | ||||||| | || ||| |||| ||| | || || || || Sbjct 156123 ATCTTTGATGCCAAACGGCTGATTGGAAGAAAGTTTAATGA-CCCAGTCGTACAGTCCGA 156065 Query 474571 TATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAGCA 474628 ||| | |||||||| |||||||| | | | ||| || || | | || | | Sbjct 156064 CATGAAGCTCTGGCCTTTCAAGGTGATTGACGATAATGGAAAGCCCAAAGTCCAGGTGGA 156005 Query 474629 ATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 ||||| ||| || || || ||| | || || ||||||| || ||||| | | Sbjct 156004 ATACA--AAGGGGAGACCAAGGCATTCTATCCTGAGGAAATTTCCTCCATGGTCCTGGTT 155947 Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 |||||||| | | || ||| | || || |||||| || | | ||||| || || Sbjct 155946 AAAATGAAGGAGATAGCTGAG-GCCTACCTGGGACAAAGGGTGTCAAACGCAGTCATCAC 155888 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || ||||| ||||| || || || || | ||||| || || ||||| || || | Sbjct 155887 AGTGCCAGCTTATTTCAACGACTCCCAGAGACAAGCTACCAAGGATGCTGGGGTGATCTC 155828 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 || || |||||| | | || |||||||| || |||||||| || |||| ||||| || Sbjct 155827 TGGACTAAATGTTCTGAGGATCATTAATGAGCCCACAGCAGCAGCCATTGCATATGGCCT 155768 Query 474868 TGATAA 474873 ||||| Sbjct 155767 GGATAA 155762 Score = 158 bits (174), Expect = 8e-33 Identities = 420/627 (67%), Gaps = 16/627 (3%) Strand=Plus/Minus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| |||| ||||| ||||| |||||||||| | | || || |||||||| | Sbjct 155477 TTGAGATTGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCCATCACAAGGGCACGTT 155418 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT-C 475666 |||| || | || ||||| || || |||| ||| || ||||| ||| || | Sbjct 155417 TTGAGGAGCTCAACTCAGATCTTTTCAGGGGAACACTTGGCCCAGTTGAGAAAGCCCTGC 155358 Query 475667 AGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 || ||| | || || || ||||| || | | ||||||||||| || || || || || || Sbjct 155357 AG-GATGCCAAGCTGGATAAATC-CAGGATTCATGAAATTGTCCTGGTTGGTGGCTCCAC 155300 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATG 475784 ||||||||| ||||| |||| ||| || | | |||||||| ||| | | || Sbjct 155299 AAGAATTCCCAAAAT-CCAGAAGCTCTTACAGGACTTCTTTAATGGCAAAGACCTGAACA 155241 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT-TTTA 475843 | || | || || ||||||||||| || || || || || ||||||||||| || | | Sbjct 155240 AGAGCATTAACCCAGATGAAGCTGTAGCCTACGGTGCAGCAGTCCAAGCAGCCATCCTCA 155181 Query 475844 TCAG-GTCA-ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTT 475901 | | | || ||| ||||| | | || | | || | || || |||| || | Sbjct 155180 TGGGCGACACCTCA---GAGAATGTCCAAGATCTGCTGCTGCTGGATGTCGCTCCCCTGT 155124 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | || ||||||| | || || ||||||| ||| || | |||| || | | Sbjct 155123 CTCTGGGCATTGAAACCGCAGGCGGTGTTATGACACCTCTGATAAAGCGAAACACCACAA 155064 Query 475962 TCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 |||| || | | ||| | | || ||||| || || ||||| || || |||| Sbjct 155063 TCCCCACAAAGCAGACTCAGA--TCTTCTCCACATACTCAGATAACCAGCCAGGTGTATT 155006 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || || | |||||||| || ||| | || ||| || ||| || || | || Sbjct 155005 GATTCAGGTATTTGAAGGCGAGAGAGCCATGACCAAATGCAACAACCTTCTGGGCAAATT 154946 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || |||||| ||||| |||||| |||| ||||| || || || || || ||||| Sbjct 154945 TGACCTCACAGGTATCCCTCCAGCTCCCCGAGGTGTTCCACAGATAGAGGTAACATTTGA 154886 Query 476140 TATTGATGCAAATGGTATTCTTAATGT 476166 ||||||||| || || ||||| ||||| Sbjct 154885 TATTGATGCCAACGGCATTCTAAATGT 154859 >seq508 Length=196674 Score = 111 bits (122), Expect = 1e-18 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||| ||| | ||||| || ||||||| ||||| | ||| | || || Sbjct 148721 TGAAGGTGAGAGAGCCATGACTAAGGACAATAACATCCTTGGGAAGTTTGAACTGACTGG 148780 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||| ||||| |||||||| || || || || ||||| ||||||||||| Sbjct 148781 TATTCCACCTGCTCCAAGAGGGGTTCCTCAGATCGAGGTGACCTTTGACATTGATGCAAA 148840 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 148841 TGGCATTCTCAATGTGTCTGC 148861 >seq91 Length=2534605 Score = 95.1 bits (104), Expect = 8e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||||||||| | || ||||| ||| ||||||| |||| || |||| ||| Sbjct 479269 GCAGTTGGTATTGACCTGGGCACTACCTACTCCTGTGTAGGAGTTTTTCAGCATGGCAAA 479328 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| || || || || ||||| |||||| | || ||| Sbjct 479329 GTGGAAATCATTGCCAATGACCAGGGAAACAGGACTACACCCAGCTATGTTGCATTCACT 479388 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || || || || ||||| ||||| || || | |||| Sbjct 479389 GACACAGAGAGGCTAATTGGGGATGCAGCCAAGAACCAAG 479428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267868812850928