Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq304 233 3e-55 seq266 228 1e-53 seq4 127 3e-23 seq117 114 2e-19 seq28 91.5 2e-12 seq48 89.7 8e-12 >seq304 Length=595338 Score = 233 bits (258), Expect = 3e-55 Identities = 198/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 591056 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGCA 590997 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 590996 GCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 590937 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||| | | ||||||| |||| ||||||||||| |||||||||| Sbjct 590936 GAGCCAGGCGGGAGGCCTCAGAGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 590877 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 590876 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 590817 Query 1485710 AAAC 1485713 | || Sbjct 590816 ACAC 590813 Score = 228 bits (252), Expect = 1e-53 Identities = 197/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 584933 TGTACTTGGTCACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGCA 584874 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 584873 GCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 584814 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||| | | ||||||| |||| ||||||||||| |||||||||| Sbjct 584813 GAGCCAGGCGGGAGGCCTCAGAGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 584754 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 584753 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 584694 Query 1485710 AAAC 1485713 | || Sbjct 584693 ACAC 584690 >seq266 Length=784704 Score = 228 bits (252), Expect = 1e-53 Identities = 197/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 299648 TGTACTTGGTCACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGCA 299589 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 299588 GCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 299529 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||| | | ||||||| |||| ||||||||||| |||||||||| Sbjct 299528 GAGCCAGGCGGGAGGCCTCAGAGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 299469 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 299468 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 299409 Query 1485710 AAAC 1485713 | || Sbjct 299408 ACAC 299405 >seq4 Length=8995252 Score = 127 bits (140), Expect = 3e-23 Identities = 166/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||||| | ||||| || ||| ||| Sbjct 8417339 TGTACTTGGTGACGGCCTTGGTTCCCTCAGACACGGCGTGTTTAGCCAGCTCCCCGGGCA 8417398 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || || || | ||| | | || ||| ||| ||||||||| || | Sbjct 8417399 GCAGCAGCCTCACCGCAGTTTGCACCTCTCTGCTGGTGATGGTGGAGCGCTTGTT-GTAC 8417457 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||||||| || || ||| | || | |||| || ||| ||||| || |||||| Sbjct 8417458 TGAGCCAGGCGGGACGCTTCTGTGGCAATCCTCTCGAACAGGTCATTGACGAAGGAGTTC 8417517 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||| ||| | | || | || || ||| ||| || || ||||| Sbjct 8417518 ATGATGCTCATGGCTCTGCTCGAAATCCCCGTGTCCGGATGAACCTG 8417564 >seq117 Length=2128962 Score = 114 bits (126), Expect = 2e-19 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 |||||||||| | | | ||| | | || ||||||| ||||||| | ||| || | Sbjct 876810 TCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCC 876869 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 |||||||||| ||||| |||||||||||||| ||| | ||||| | |||| |||||| Sbjct 876870 CCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGC 876929 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCAT 2069714 |||||||||| | || | |||||||||||| Sbjct 876930 CCAGGATCTGGGCGGTGGAGGCCGTGGGCAT 876960 Score = 113 bits (124), Expect = 7e-19 Identities = 274/421 (65%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| ||||| || ||||| |||||| || | |||||||||| ||||||||||||| Sbjct 877461 ACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGC 877520 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | || |||| ||| || |||| | |||||| |||| || || || |||||| | Sbjct 877521 TCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACT 877580 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || ||| || |||||| || | || |||| | || | | |||| Sbjct 877581 CGATGATTGCATACCAAAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCCTTCT 877640 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 |||| | ||||| | | || |||||| | ||| ||||| | Sbjct 877641 CATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGT 877700 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873 ||| ||| || | || |||||||| || || |||| || ||| || ||||| Sbjct 877701 CGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAG 877760 Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933 |||||||| |||| || || || | || || | ||||||||| || |||||| | Sbjct 877761 GGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCT 877820 Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993 |||| || || |||| | | ||| |||||| ||||||||||| ||| ||||||| Sbjct 877821 TCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGC 877880 Query 2071994 C 2071994 | Sbjct 877881 C 877881 Score = 102 bits (112), Expect = 1e-15 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || ||||| ||||| |||| ||| | || | | ||| || || || |||||||| Sbjct 877900 CTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGA 877959 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGC----GCACCTTGTGCGCGGCAA 2073655 |||||||||||| || | |||| |||| || | ||| || | || | Sbjct 877960 ACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGA----CTGCCA 878015 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 ||| || || || || | ||||||||||| ||||| | |||||||| |||||||| | Sbjct 878016 CGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCC 878075 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||| ||| |||||||| | | ||| ||||| Sbjct 878076 CCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCA 878112 >seq28 Length=5070235 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| ||||||| || ||||||| ||||| ||||||||||| ||| || | || Sbjct 3406832 ACCTCCTCCACGGTCCAGAAAGAGGCCTGGGCCTGTTTGTACATCTTCCAGATGTCTCGG 3406773 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || ||||||| || | ||||| || |||||||||| || ||||| || || Sbjct 3406772 TACTGGATGGGAAAAATGACAAACCGCCTGGGGTTCTCTCGGAGCAGAGGTTC 3406720 >seq48 Length=3648740 Score = 89.7 bits (98), Expect = 8e-12 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||| |||| | ||||| | |||||| ||| ||||||||||| ||||| | || Sbjct 3225504 CACCT-CGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCT 3225446 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| ||||| |||||||| ||| |||||||| ||||| ||||| || ||||||| Sbjct 3225445 TCTTCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAA 3225386 Query 794459 AGCCGACGAGCCGCTC 794474 || | || | ||||| Sbjct 3225385 AGGCCACCACGCGCTC 3225370 Score = 89.7 bits (98), Expect = 8e-12 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||| |||| | ||||| | |||||| ||| ||||||||||| ||||| | || Sbjct 3235726 CACCT-CGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCT 3235784 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| ||||| |||||||| ||| |||||||| ||||| ||||| || ||||||| Sbjct 3235785 TCTTCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAA 3235844 Query 794459 AGCCGACGAGCCGCTC 794474 || | || | ||||| Sbjct 3235845 AGGCCACCACGCGCTC 3235860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915476673676604