Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq117 199 4e-46 seq64 113 4e-20 seq80 100 3e-16 seq249 96.9 3e-15 seq48 89.7 5e-13 >seq117 Length=2128962 Score = 199 bits (220), Expect = 4e-46 Identities = 972/1529 (64%), Gaps = 42/1529 (3%) Strand=Plus/Plus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||| | | || || | ||||||||| || | |||||| || || Sbjct 876828 TCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGG 876887 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | || | |||||||||||||||| ||||| ||||| | Sbjct 876888 TGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 876947 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT---TATTT 148413 ||||||||||| | | |||||| ||| | || ||| || ||| || | Sbjct 876948 AGGCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCA---CGCCATGTTTGGCGATCT 877004 Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACT 148473 | |||||| | ||||||||| || || || ||| | |||||||||||||| Sbjct 877005 TCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACT 877064 Query 148474 GCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCG 148533 | |||||||| || | || ||| || |||| || | ||| || | || | Sbjct 877065 GGAGAATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCGAGCTCGGCGG 877124 Query 148534 CCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA 148593 ||| ||||||||||| || | ||| | || || || ||||| || || |||||| Sbjct 877125 CCAACTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGA 877184 Query 148594 GCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGC 148653 |||| ||| |||||| | || ||||| | | || || || || | | Sbjct 877185 GCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATAAGGATGAAGGCATCAGCCAATC 877244 Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCG 148713 |||| || || | || || |||| ||| ||||| || | || || | || Sbjct 877245 CCTGGACCCCGATTCCTATCGGCCTGTGCCGCATGTTCGACCTCCTGGCTTCTTCCACCG 877304 Query 148714 GATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGT-AATTCT 148771 | |||| |||| |||||| | |||| ||||| || | || | || || || | | Sbjct 877305 GGTAGTAGTTGATGTCGATAACCTTGTTCAAG-TTCCTGACAATTACTTTGGTCACGGAT 877363 Query 148772 GCGCAGCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATAGA 148828 || || || ||| || || | ||| || | | ||| | |||| ||| Sbjct 877364 GC-CAATTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGACAGA 877422 Query 148829 GGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAG 148888 ||| |||||||| || ||| ||| ||| | ||||||| ||||| || | ||| || Sbjct 877423 GGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAG 877482 Query 148889 ATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTT 148948 |||||||| ||||| ||||| |||| || |||||||| |||||||| || || || Sbjct 877483 GTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTT 877542 Query 148949 GTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACC---GATG 149002 ||| | ||||||||| || ||||| ||||| || | || ||| | || Sbjct 877543 GTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCTG 877602 Query 149003 CAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAG 149062 | | ||| | | ||| ||| | | | ||||||| ||| ||| || || || Sbjct 877603 CTGAGCCTTCAC---CACACGCTTCAC---CCTCCCCTCCTTCTCATATCTGGTGTAGAG 877656 Query 149063 CCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAG 149122 || ||| |||| || |||| || || || |||||||| | | ||| ||||| || Sbjct 877657 TTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAG 877716 Query 149123 CGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTA 149182 ||||| | ||| | ||| |||||||| || || || || | ||| || ||||| Sbjct 877717 GGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTA 877776 Query 149183 CATGAGGTCGCGCGCCTTGCAG-TCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGC 149241 | ||||| | | || || | || || ||| |||| ||| | || | | Sbjct 877777 GAACAGGTC-CCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 877835 Query 149242 TGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC----CTTGCGCTTG 149297 || | || |||||| ||||| | ||||| |||| ||||| ||| | || Sbjct 877836 CAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCAGGTCTTTTG-TTC 877894 Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGT--TAAACACTCGAACCATAGGTTCAATGC 149355 || ||||| || || | ||| | |||||| ||||| ||| | ||| || | | | Sbjct 877895 CCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTC--AACATTGGGACGAGCC 877952 Query 149356 CACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGT 149415 | ||| | |||||| || | ||| || || | || | | || Sbjct 877953 CGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTG 878012 Query 149416 TGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGA 149475 ||||| || || || | | || |||||| ||||| | ||||| ||||| Sbjct 878013 CCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGA 878072 Query 149476 TGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAAC 149535 | |||||||||||||| |||||||| ||||| ||||| | ||| ||||| Sbjct 878073 TCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGT 878132 Query 149536 GCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCT 149595 || || || ||| | ||| ||| |||||| || || | |||| || || | Sbjct 878133 TGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGT 878192 Query 149596 CGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCA 149655 ||| | ||||| || || || || || ||||| || | || || | ||| | Sbjct 878193 TGTAGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGA 878252 Query 149656 GCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA---ATTTTGAGCAAGTAGCCGTTTT 149712 |||| |||||||| ||||| || |||||| ||| || || |||| |||| | | Sbjct 878253 GCATGTGCTGCGGACGCTCAGCTACTTTG---CCATTGATCTTTAGCAGGTAGGAGCGCT 878309 Query 149713 CTAGTGTCTTGTAGCCAAAGTACTTGTAG 149741 | || |||||| |||||||| | |||||| Sbjct 878310 CCAGAGTCTTGAAGCCAAAGAAGTTGTAG 878338 >seq64 Length=3290765 Score = 113 bits (124), Expect = 4e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | ||||||||||||| ||||||| ||||| ||| | |||| Sbjct 2550742 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGAT 2550683 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 | ||||| |||||||| || |||||||| | |||||| ||| |||||||| ||||| Sbjct 2550682 TACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCG 2550623 >seq80 Length=2822622 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || | || |||| ||||||||| || || ||||| ||||| || | Sbjct 742253 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGG 742312 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 || || ||||| | ||||| ||||| ||||||| || |||| |||| ||| || Sbjct 742313 ATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTA 742372 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || ||||| || || ||||||||| Sbjct 742373 CCAGTTAGGGTTTTCACAAAGATCTGCATG 742402 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || |||| ||||||||| || || |||||||||||||| ||| || ||| | | | Sbjct 766517 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTC 766576 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | |||||| ||||||| || || | ||||| ||| ||||| || || ||||| || Sbjct 766577 TCGATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGCGTTTTCACA 766636 Query 133650 AAAATCTGCATG 133661 || ||||||||| Sbjct 766637 AAGATCTGCATG 766648 >seq249 Length=855460 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | || |||| ||||||||| || |||||||||||||| Sbjct 398352 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTA 398293 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||| | | ||||| ||||| ||||||| || || | |||| | Sbjct 398292 TCCTGGATTTTGGCCTTCAAGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATG 398233 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || || || || || ||||||||| Sbjct 398232 GTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATG 398197 >seq48 Length=3648740 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||| || |||||||||||||| | |||| || |||| | |||| ||| Sbjct 3225488 ATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTCAGCCAGAAGATG 3225429 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||||| || ||||| ||||| | |||||||| ||||||||| |||| |||||| Sbjct 3225428 GCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCCACCACGCGCTC 3225370 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||| || |||||||||||||| | |||| || |||| | |||| ||| Sbjct 3235742 ATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTCAGCCAGAAGATG 3235801 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||||| || ||||| ||||| | |||||||| ||||||||| |||| |||||| Sbjct 3235802 GCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCCACCACGCGCTC 3235860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483377074588640