Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq304 194 2e-43 seq266 194 2e-43 seq117 120 4e-21 seq48 89.7 7e-12 >seq304 Length=595338 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 584693 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 584746 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | | |||||| ||| Sbjct 584747 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCTGAGGCCTCCCGC 584806 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 584807 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 584866 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 584867 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 584915 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 590816 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 590869 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | | |||||| ||| Sbjct 590870 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCTGAGGCCTCCCGC 590929 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 590930 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 590989 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 590990 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 591038 >seq266 Length=784704 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 299408 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 299461 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | | |||||| ||| Sbjct 299462 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCTGAGGCCTCCCGC 299521 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 299522 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 299581 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 299582 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 299630 >seq117 Length=2128962 Score = 120 bits (132), Expect = 4e-21 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 262915 CATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATC 262974 |||||| || | ||| |||| || | | |||||||||||| | || | |||||| Sbjct 876993 CATGGCGTGAGGAACAGCCTGCTGCTGTCCCCAATGCCCACGGCCTCCACCGCCCAGATC 876934 Query 262975 CTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTC 263034 |||||||||| |||| | |||||| | ||| |||||||||||||| ||||| |||||| Sbjct 876933 CTGGGCAACAACGAGTCCATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTC 876874 Query 263035 TCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTG 263094 ||||| || ||| | ||||||| ||||||| |||| | || | | | |||||| Sbjct 876873 TCGGGGGAGTTTCAGATCGTCAACCCCCACCTGCTCAAAGACCTGACAGAGAGGGGCCTG 876814 Query 263095 TGGA 263098 |||| Sbjct 876813 TGGA 876810 Score = 104 bits (114), Expect = 3e-16 Identities = 198/291 (68%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 |||| || ||| ||||||| || | || || ||||| ||||| || || | | Sbjct 878186 TGTCAGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGC 878127 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 ||||| || ||||| ||| | | |||||||| || |||||||| ||||| | Sbjct 878126 CGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGGATCTACG 878067 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 ||||||| ||||| ||||| ||||||||||| | || || || || || | || | Sbjct 878066 ACACGCTGAAGCATTGCGCCCTCATCTCCAAATCAGCTGGAGGGATTGGCGTGGCAG--- 878010 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | || |||| |||| | || |||||||||||| |||||||| Sbjct 878009 -TCAGCTGCATTAGATCCACGGGGAGCTACATCGCCGGCACCAACGGCTGTTCCAACGGG 877951 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || || ||| | | |||| ||| |||| ||||| || || || ||| Sbjct 877950 CTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTATGTTGATCAG 877900 Score = 89.7 bits (98), Expect = 7e-12 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| || || ||| | | || | || ||||| ||||| |||||||||||| Sbjct 877602 CAGCTTTGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTACATGGTCTAC 877543 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 || || ||| |||| || |||||||||||||| |||||||||| | || | ||| Sbjct 877542 AAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCA-AGTGCAGCAA 877484 Query 262210 CCTGTGCACCGAGATCGTCCAGT 262232 ||| ||||| || |||||| ||| Sbjct 877483 CCTCTGCACGGAAATCGTCGAGT 877461 >seq48 Length=3648740 Score = 89.7 bits (98), Expect = 7e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||| | || || || | | ||||| || | || ||||| |||||||||||| Sbjct 3224963 CGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCAGATCGCC 3225022 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || | ||| || ||||||||||| ||| |||||||||| Sbjct 3225023 ATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGGACCC 3225081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177113274500232