Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq249 89.7 5e-13 seq80 89.7 5e-13 seq362 84.2 2e-11 >seq249 Length=855460 Score = 89.7 bits (98), Expect = 5e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 35550 TTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCA 35609 || || ||||||| || | | ||| | | || ||||||||||| || ||||| |||| Sbjct 398384 TTGGAGTGTTGTAGTCAGAGAGGGTGTGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCA 398325 Query 35610 ACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCC 35668 || ||||||||| | || | || ||||| ||| ||| || ||||| |||| | Sbjct 398324 GCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATTTTGGCCTTCA-AGTTCTCA 398266 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | ||||| || | || ||||||| ||||| || ||||| || | || || ||||| Sbjct 398265 ATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTACCAGTGAGGGTCTTGACAAAG 398206 Query 35729 ATCTGCAT 35736 |||||||| Sbjct 398205 ATCTGCAT 398198 >seq80 Length=2822622 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| |||| || ||||||||| | |||| || |||||| ||| | Sbjct 742253 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGG 742312 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 || || ||| | | | | | ||||| || | || ||||| | ||||| || ||| Sbjct 742313 ATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTA 742372 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | ||||||||||| |||||||| Sbjct 742373 CCAGTTAGGGTTTTCACAAAGATCTGCAT 742401 >seq362 Length=447939 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 44303 CGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGAC-AGGGCGTGGCGAGAGCTACCCA 44361 |||||| ||||||||||| |||||||| |||||||| ||||| |||| ||| | || Sbjct 317463 CGTAGGTTGTATGTGGTCTATTTGCGGCATCCACGACCAGGGCTGGGCG-GAGAGAGCCG 317405 Query 44362 TCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTT 44411 | | ||| || | ||||||||||||||||| || ||| | | |||||| Sbjct 317404 TATTCGGGAAGATCCGCTACATGAACTACAAAGGCTGCCTTCGGAAGTTT 317355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450752825718880