Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq117 367 2e-96 seq64 111 2e-19 seq28 102 1e-16 >seq117 Length=2128962 Score = 367 bits (406), Expect = 2e-96 Identities = 1257/1949 (64%), Gaps = 33/1949 (2%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| |||||||||| ||||| || | || | || || || || || Sbjct 876794 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 876853 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| ||||| || | ||| | || ||||| || || || || || | || Sbjct 876854 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 876913 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || | || || Sbjct 876914 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 876973 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | |||||| | ||| || || || || | ||||| ||||| || Sbjct 876974 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 877033 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | ||| | ||| | ||||| || ||||| || ||||| | || || Sbjct 877034 TCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCT 877093 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | ||| || ||||| | || || | || | || || || || || || || | Sbjct 877094 TCATACGTCTCATAGGTGCCGAGCTCGGCGGCCAACTCGCAGCTCGCTTCCAAAGCGGCA 877153 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 ||||| || || || || |||| | ||||| ||| || || | || || || ||| Sbjct 877154 TAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGA 877213 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | ||| || || ||||| ||||||||||| ||||| || || || || || || Sbjct 877214 TAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGC 877273 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | | | || || || |||||| | || || || || || || |||| || || Sbjct 877274 CGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTC 877333 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA---TCGTCCA 69249 | || | ||| | |||||| |||| | ||| ||| ||| | || || Sbjct 877334 AAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGCTCA 877393 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | || |||| || || || ||||| || ||||| ||||| || ||||| | Sbjct 877394 GGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTC----GTC 877449 Query 69310 TTTGCATATTGTATT-----ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGAT 69364 |||| || |||| | || || || || || || || || ||||| || ||||||| Sbjct 877450 CTTGC-TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGAT 877508 Query 69365 TTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTT 69424 | ||||| || ||||| |||| ||||| || ||||| | || |||| || || |||| Sbjct 877509 TCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTT 877568 Query 69425 CAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC 69484 | |||| || ||||| || | | ||||| | ||| || | || ||| | Sbjct 877569 CTGTCTGCGACTCGATGATTGCATACCAAAGCTGCTGAGCCTTCACCACACGCTTCACCC 877628 Query 69485 GCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCA 69544 | ||| || |||||| || || || ||| || || || ||||| ||||||| Sbjct 877629 TCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCA 877688 Query 69545 ATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCA 69604 || || || || |||||||||| ||||| | || | | || || || |||| Sbjct 877689 GCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCA 877748 Query 69605 TAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTC 69664 | || || || || ||||| || || || || || |||| || | || || |||| Sbjct 877749 TGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTC 877808 Query 69665 CTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 69724 | || || || || || || || || || | | ||| | ||||| || || || || | Sbjct 877809 CCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACA 877868 Query 69725 TCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTAT 69784 | || | | | || |||| ||| || || |||||||| | || | || ||||| || | Sbjct 877869 TGGCGAAGGCGCCAGGTCTTTTGTTCCCCCCCTGATCAACATAACGCGCTGTGTTGTTGT 877928 Query 69785 AGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTC 69844 | || |||| ||| || | | || || || || || || || | || || || | Sbjct 877929 AAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCC 877988 Query 69845 CTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAG 69904 | | | | ||| || | | | || || ||||| || ||| ||||| || | Sbjct 877989 CCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGG 878048 Query 69905 CACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAA 69964 | ||| | |||| ||||| || || ||||| ||||| ||||| ||||| || || | Sbjct 878049 CGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGA 878108 Query 69965 AACAGCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGA 70023 | ||||| |||| || | ||| | ||||| ||||| || | || || || ||||| Sbjct 878109 AGCAGCTGGACAGCTGCGGCCTGT-TGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGG 878167 Query 70024 GTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGA 70083 |||||||| || || || ||||| ||||| || || || ||| ||| |||||| | Sbjct 878168 GTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTCCCG 878227 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || || | ||| | ||| ||||| || || || | ||| ||| Sbjct 878228 TGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTG 878287 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 || || | |||||| || |||||||| || || ||||| ||||||| || || ||| Sbjct 878288 ATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCT 878347 Query 70204 CTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACA 70263 || || || || || | || || || || || | | ||| || || | Sbjct 878348 CTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTC-----GA 878402 Query 70264 GTAGGT-----GAGATAAT--CGGAG-ATCGTTTACCATTTTTAGGATTAACATAGTTGA 70315 || || || || || |||| ||||| || || || | |||||| Sbjct 878403 GTGTGTCTTTCGAAATCATGGAGGAGTGGCGTTT---GTTCAGGGGGTTGATGTAGTTGT 878459 Query 70316 ATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGG 70375 | | || ||||| || || || || | || || || || ||||| || || || | || Sbjct 878460 ACAGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGG 878519 Query 70376 CTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTT 70435 | || | ||||| || || || ||||| || | | || || ||| || || || | Sbjct 878520 CGATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCT 878579 Query 70436 CCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTT 70495 |||| || | ||| || | || | ||| || || ||| | || | || || || || | Sbjct 878580 CCGCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCT 878639 Query 70496 TCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-A 70554 |||| | || | | || || | || || |||| || || || || || |||| Sbjct 878640 TCATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGG 878698 Query 70555 ATACGAGATGTAATTTTATCAAACATAAC 70583 || |||||||| ||||| || ||||| || Sbjct 878699 ATGCGAGATGTGATTTTGTCGAACATGAC 878727 >seq64 Length=3290765 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || ||||| || ||||||| || ||||| |||||||||||||||||| || Sbjct 2550731 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGATTACTCTTTCTG 2550672 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || ||||| |||||||||| || | || ||||||||||| |||| || || || || Sbjct 2550671 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGAT 2550613 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || ||||||||||| || || | | || | |||||||| ||||| | ||| |||| Sbjct 2551296 TAGGTTTCATAAGGGCCAAGCTCTGCTGCCAACTCACAACTGGCCTCCAGGGCAGCGTAG 2551237 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || || || || || |||| | ||||| || || ||| | || || || ||||| Sbjct 2551236 TACATGGTCTCAAAGATCTGAATGTTGAGCAACTGGGCCTCTGGGCTTTCAAACGGATAG 2551177 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | || ||||| ||||| |||| ||||| || ||||| || || || || || | | Sbjct 2551176 CGCATGAGGATAAAAGCATCAGCCAGACCCTGCACACCAATTCCAATTGGCCTGTGACGC 2551117 Query 69136 TTATTTGAACTTTCAGC 69152 || || || |||||||| Sbjct 2551116 TTGTTAGACCTTTCAGC 2551100 >seq28 Length=5070235 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | ||||| || | | || ||||||||||| || | ||| | Sbjct 3408937 CCTCATCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCT 3408878 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | || |||||||| || ||||| |||||||||||||| || |||||||| | Sbjct 3408877 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 3408818 Query 39759 CAACAA 39764 | |||| Sbjct 3408817 CCACAA 3408812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686846669099040