Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq50 96.9 3e-15 seq48 95.1 1e-14 seq87 93.3 3e-14 >seq50 Length=3533640 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 87331 GCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAAAC 87390 ||||||| ||| || |||||| | || || ||||| || ||| |||| || |||| ||| Sbjct 3078242 GCTCCCATTTTGCTGAAATCTCTTTTGGACTGAAAGGTGTAGGCTGTTAATACAGCGAAC 3078301 Query 87391 ACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGT 87443 |||||||| || | ||| | | ||| ||||| |||||||| ||||||||||| Sbjct 3078302 ACAGCACAGGTGAGAAACAAAGCTTGCAGTATTGTGGAGTAATCATAGAAGGT 3078354 >seq48 Length=3648740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924 ||||||| || |||||||||||| |||||| |||||||||||||| ||| | || | Sbjct 635485 CTCTGACGAATGCCCAGGCATCTCGCTCTGAGGCAAACTTCTTAAAGGAGGCAGAAGGAA 635544 Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||||||| |||||||||||||| || |||| Sbjct 635545 ATTTGTCCACTTGGCTCTTACACTCGTCCC 635574 Score = 87.8 bits (96), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| ||||||| || ||| || |||||| |||| |||||| || |||||| Sbjct 632582 CCAGACCACCTCCACCTGTCCATTCAGCCTGTCCAGTTTCACAAAGTCGTCTTTGTTGGT 632641 Query 77371 AA-CTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 || | |||| ||| | || ||||||||||||| ||||||||||||| ||||| | | Sbjct 632642 AATCAGACC-TCCAGATTTCAACCTCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGCTGG 632700 Query 77430 TCACACC 77436 ||||||| Sbjct 632701 TCACACC 632707 >seq87 Length=2632686 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| |||| || || || | || ||||| ||||| ||| | || || ||||| Sbjct 460828 GATGGCGCTGCCCCCCTGCCACGCACTCTGCCAGTTCTACGTGTGCGACGGCGAGCTGTC 460887 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 ||||| |||| || | || | ||| |||||| ||||||| || || ||||| || || Sbjct 460888 GTGTCAGCTGTACCAGCGCTCTGCTGATATGGGATTAGGGGTGCCTTTCAACATCGCCAG 460947 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | || || || || |||||||||||| |||| Sbjct 460948 CTATTCACTTCTTACCTACATGATTGCACACATTAC 460983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397420948852180