Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq117 217 2e-51 seq28 82.4 1e-10 >seq117 Length=2128962 Score = 217 bits (240), Expect = 2e-51 Identities = 961/1494 (64%), Gaps = 48/1494 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| ||| || || ||| | ||||| |||| ||||| |||||| Sbjct 876796 CTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGAC 876855 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | ||| | | ||||||||| ||||||| | || | Sbjct 876856 GATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGAT 876915 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || |||||||| | || || || Sbjct 876916 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGCAG 876975 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 110853 ||||| | | || | | ||| ||||| || | | |||||| | | Sbjct 876976 GCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 877035 Query 110854 C-TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCT 110912 | |||| || || |||||||||| |||| || | || | | | || || || | Sbjct 877036 CGTTGGCGTCTTCT-CCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTT 877094 Query 110913 CAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGT 110972 || | || ||||||| || | | | ||||| || |||||||| |||| | || | Sbjct 877095 CATACGTCTCATAGGTGCCGAGCTCGGCGGCCAACTCGCAGCTCGCTTCCAAAGCGGCAT 877154 Query 110973 GATACATGGTTTCAAAGATACG-------AGCA-TTCATCTCCTTGGCTTCATCTGAATC 111024 |||||| || |||||||| | |||| || | | | ||||| || Sbjct 877155 AATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTT--------TC 877206 Query 111025 AAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAG 111083 ||| | || || || || || || |||| || | || || || || | || || | Sbjct 877207 AAAGGGATAACG-CATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCG 877265 Query 111084 GTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGA 111143 | ||||| ||||| || ||| | | || || || || || | || |||| || | Sbjct 877266 GCCTGTGCCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAA 877325 Query 111144 CTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC--ATGA-AGTTTTTCATAATCAA 111200 | ||| | || || ||||| | || | | ||| | ||||| | | ||| Sbjct 877326 CCTTGTTCAAGTTCCTG---ACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCAT 877382 Query 111201 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 111260 |||| || ||| |||| ||| | || |||| || |||| ||||||||| | Sbjct 877383 AAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCG 877439 Query 111261 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCG 111320 || ||| ||||| |||||||| | ||||| || || | |||| | ||| || | Sbjct 877440 CCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGG 877499 Query 111321 TCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 111380 | |||| ||||| ||||| |||||| ||||||| ||||| ||||||| |||||| |||| Sbjct 877500 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCG 877559 Query 111381 TCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATG 111439 |||| || || ||||| || | || || || | ||||| | | | | || || Sbjct 877560 TCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCTGCTGAGCCTTCACCACAC 877619 Query 111440 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 111499 || || ||| |||||| ||| || | |||||||| ||||||||||||| ||| | Sbjct 877620 GC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCC-CA 877677 Query 111500 GCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTC 111558 || || || || || | | | ||||| | || ||||| | | | ||| Sbjct 877678 GCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTC 877737 Query 111559 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGC 111618 |||||||||||||| ||||| || |||||||||| | || || || || || Sbjct 877738 CACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTG 877797 Query 111619 CTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATG 111677 ||| || | || ||| || | | ||| ||||| || | | ||| |||||| | Sbjct 877798 CTCCTCCTTTCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGG 877856 Query 111678 GCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGC 111733 |||| || || | |||| | || |||| | ||| | |||| ||||| ||| Sbjct 877857 GCTCCAGGTACATGGCGAAGGCGCCAGGTCTTTTG-TTCCCCCCCTGATCAACATAACGC 877915 Query 111734 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 111793 |||||| ||| | || | | |||||| | | || | || || || || || Sbjct 877916 GCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCG 877975 Query 111794 CGAATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCC 111850 || || | ||| ||| | || | || || || ||||| || ||||| Sbjct 877976 GCGAT-GTAGCTCCCCGTGGATCTAATGCAGC-TGACTG-CCACGCCAATCCCTCCAGCT 878032 Query 111851 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 111910 | || ||||| | || || | | | || || | ||||| || | ||| ||| ||| Sbjct 878033 GATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCC 878092 Query 111911 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGG 111970 || |||||| |||||||| ||||||| |||||| || || ||||||||||||||| Sbjct 878093 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGG 878152 Query 111971 GTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGA 112029 || || | ||||| ||||| || | | |||| | || ||| ||||| | ||| | Sbjct 878153 GTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGC 878211 Query 112030 ATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || || || ||||||||| || | || |||| ||||| ||||| ||| || Sbjct 878212 TTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGG 878265 >seq28 Length=5070235 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||| | | ||| || || || ||| ||| || || ||||| || |||| ||||| Sbjct 3408937 CCTCATCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCT 3408878 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| ||| || ||||| ||| ||||| || ||||||||||| || |||||| ||||| Sbjct 3408877 TCAGCCAGTAGATAGCAGCA-AATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAA 3408819 Query 122797 GC 122798 || Sbjct 3408818 GC 3408817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627975194505600