Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq117 203 4e-47 seq48 86.0 8e-12 seq64 84.2 3e-11 seq28 84.2 3e-11 >seq117 Length=2128962 Score = 203 bits (224), Expect = 4e-47 Identities = 890/1383 (64%), Gaps = 28/1383 (2%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 876890 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 876949 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || | || || |||||||| | | || | || || ||| Sbjct 876950 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 877009 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAG 118360 || || ||| ||| |||| | | | ||| | | || |||||| || ||||||| Sbjct 877010 TTCAGCAGCTTCC-AGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAG 877068 Query 118361 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 118420 || || | | | ||||| || ||| | |||||||| | ||| | | ||||| Sbjct 877069 AATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCGAGCTCGGCGGCCAA 877128 Query 118421 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGC 118480 ||| ||||||| || | || || | |||||| || ||||| || | || | || Sbjct 877129 CTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGA--GC 877186 Query 118481 C-TTG-GCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACC 118537 ||| |||||| | ||||| | || ||| || || || |||| || | || Sbjct 877187 AGTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAGGCATCAGCCAATCC 877245 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGG 118597 ||||| |||| || || || | || | ||| || ||| ||| || ||||| || Sbjct 877246 CTGGACCCCGATTCCTATCGGCCTGTGCCGCATGTTCGACCTCCTGGCTTCTTCCACCGG 877305 Query 118598 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 118657 || | || | ||||||||| | || | || || | || || || | ||| Sbjct 877306 GTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG-ATG 877364 Query 118658 AAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 118716 |||| || ||| || | || ||| |||| ||| | || |||| | Sbjct 877365 CCAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAG 877421 Query 118717 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACA 118776 | |||||||| || || | ||| ||||| ||||||||| | ||||||||||| | Sbjct 877422 AGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGA 877481 Query 118777 AGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 ||| | ||| |||||||||| |||| || || ||| |||| || ||||| | Sbjct 877482 GGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTT 877541 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896 |||| | |||||| |||||||| || || || || |||| || || || | ||| | | Sbjct 877542 TGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCT 877601 Query 118897 CGGCAGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCT 118955 ||| ||| | || || | | |||||| | ||| || | |||||||| || Sbjct 877602 GCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCT 877660 Query 118956 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 119015 |||||||| || ||| | ||| ||||| || | | || || | || ||| Sbjct 877661 TCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGAC 877720 Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075 || | | | ||| |||||||||||||||||||| |||||||| || || |||| Sbjct 877721 CAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAC 877780 Query 119076 AGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134 || |||| || ||| || | | ||| || || || ||||| ||||| | Sbjct 877781 AGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCAAA 877839 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAG 119190 | ||| |||||| || |||||||||| |||| | || ||| | || Sbjct 877840 CACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCAGGTCTTTTGTTCCCCC- 877898 Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250 |||| | ||||| | ||| ||| ||| | || | | |||||| | || || | || Sbjct 877899 CCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGG 877958 Query 119251 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCGTGGATGTGCAT 119308 | ||| || || || || | ||| ||| | || | || || || Sbjct 877959 AACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGC-TGACTGC-CAC 878016 Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 ||||| || || || | || ||||| | ||||| | | | || || |||||||||| Sbjct 878017 GCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCC 878076 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 ||||| |||| |||| | |||| ||||||||||| |||| || |||||| || Sbjct 878077 CTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGT 878136 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGT 119487 ||||| |||||||| || || | |||||| ||||| || | | |||| | || || Sbjct 878137 TCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGT 878195 Query 119488 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 ||||||| | ||| || || || |||||| || || | | |||| ||| | || Sbjct 878196 AGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCA 878255 Query 119548 TGT 119550 ||| Sbjct 878256 TGT 878258 >seq48 Length=3648740 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 3225502 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3225443 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||||| || || || || || ||||||||||||||||||||| Sbjct 3225442 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 3225393 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 3235728 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3235787 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||||| || || || || || ||||||||||||||||||||| Sbjct 3235788 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 3235837 >seq64 Length=3290765 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||| || |||||||||| || || ||||||| || || | | | |||||| Sbjct 2550756 CTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATT--TGATGGTG 2550699 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| ||| | ||||| |||| |||| || ||||||||||||| ||||||||| || Sbjct 2550698 CCCAGGTTTTGCTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTA 2550639 Query 118857 CCCGTCTCCGTTTGGGACT 118875 || || || || || |||| Sbjct 2550638 CCAGTTTCTGTCTGCGACT 2550620 >seq28 Length=5070235 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 130049 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 130108 ||||| || || ||| ||| || || ||||| || |||| |||||||| |||| | || Sbjct 3408923 ATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCTTCAGCCAGTAGATA 3408864 Query 130109 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||||| |||||||||||||| || |||||| Sbjct 3408863 GCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 3408828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618379262536160