Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq117 167 3e-36 seq48 87.8 2e-12 seq64 86.0 7e-12 seq28 84.2 3e-11 >seq117 Length=2128962 Score = 167 bits (184), Expect = 3e-36 Identities = 944/1486 (64%), Gaps = 32/1486 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||||| | || || || ||| || || || | ||| Sbjct 878265 CCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCACGGGACGGATATCGAAGCAGTC 878206 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | |||| | | || ||||| ||||| | || |||||||| Sbjct 878205 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCTT 878147 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||||||| || || || || ||||||| |||||||| |||||| ||||| || Sbjct 878146 CAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGA 878087 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | || ||||| | || || | | | || || | ||||| || | ||||| Sbjct 878086 CAGCATCGAGGGGATCTACGACACGCTGAAGCATTGCGCCCTCATCTCCAAATCAGCTGG 878027 Query 104461 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 104517 || ||||| || || || | || | ||| ||| | || || || || Sbjct 878026 AGGGATTGGCGTGG-CAGTCA-GCTGCATTAGATCCACGGGGAGCTAC-ATCGCCGGCAC 877970 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || || | || | | |||||| | | || | ||| ||||||||| || Sbjct 877969 CAACGGCTGTTCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTA 877910 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 ||| |||| | ||| | |||| || | |||| | || || ||||| |||| Sbjct 877909 TGTTGATCAGGGGGGGAA-CAAAAGACCTGGCGCCTTCGCCATGTACCTGGAGCCCTGGC 877851 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || ||| | | || ||||| ||| || ||| || | |||||| ||| Sbjct 877850 ACTTCGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAG 877791 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | | || || |||| ||| || ||||| || || |||||||||||| | || ||| | | Sbjct 877790 CCAGGGACCTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACA 877731 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 | | ||||| || | ||||| | | | || || || || ||| | ||| Sbjct 877730 ACGAAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGAGTGCTG-GGGG 877672 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACGGT 104871 ||||||||||||| || ||||| | || ||| | || || ||| || ||| ||| Sbjct 877671 GAGGAGTTTGAAGAACTCTACACCAGATATGAGAAGGAGGGGAGGGTGA-AGCGTGTGGT 877613 Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 | ||| | | ||| | || || || |||| || || || || || || || || Sbjct 877612 GAAGGCTCAGCAGCTTTGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTA 877553 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||| | |||||||| ||||| ||| ||||| || || ||||| |||| ||||| Sbjct 877552 CATGGTCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAA 877493 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 | | ||| ||||| || |||||| | || | || ||| || ||| ||| || || Sbjct 877492 GTGCAGCAACCTCTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCGGTTTG 877433 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 105111 || || || || |||||||| || ||| || || ||| ||| | ||| | Sbjct 877432 CAATCTGGCCTCTGTCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTATGACTT 877376 Query 105112 TGAAAAACTCCACGAAGTTACGAA---AACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | ||||| | || || || || ||| || ||| | |||| ||||| || Sbjct 877375 TAAAAAATTGGCATCCGTGACCAAAGTAATTGT---CAGGAACTTGAACAAGGTTATCGA 877319 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | || | ||||| || || || | | || || ||| | ||| | || || || Sbjct 877318 CATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTCGAACATGCGGCACAGGCCGATAGG 877259 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 |||| || ||||| | || |||| ||||| ||| || | | ||||| | Sbjct 877258 AATCGGGGTCCAGGGATTGGCTGATGCCTTCATCCTTATGCGTTATCCCTTTGAAAGCCC 877199 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||| || | |||| | || |||||||| |||||| | |||||| | || || Sbjct 877198 CGAGGCTCAACTGCTCAACATCCAGATCTTTGAGACTATGTATTATGCCGCTTTGGAAGC 877139 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 ||| | |||||||| | | || | ||||| || | ||| || || || | | Sbjct 877138 GAGCTGCGAGTTGGCCGCCGAGCTCGGCACCTATGAGACGTATGAAGGCTCGCC-GGTGA 877080 Query 105409 ACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGG 105466 ||||| | || || | || ||||||| || || |||| | | | |||| | Sbjct 877079 GTAAGGGCATTCTCCAGTACGACATGTGGG-AGAAGACGCCAACGGACCTGTGGGACT-G 877022 Query 105467 GAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 |||||| || ||||| ||| | | || | | ||||| || || || | || Sbjct 877021 GAAGCTGCTGAAGGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTGCTGTCCCC 876962 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 |||||| || ||||||||||| || ||| |||| || || || | | | || ||||||| Sbjct 876961 AATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACAC 876902 Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCT 105645 | |||||||| | | ||| |||| |||||| ||| |||||| || || Sbjct 876901 AAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAACCCCCACCT 876842 Query 105646 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | | ||||| | ||||| || || ||| |||| |||||| Sbjct 876841 GCTCAAAGACCTGACAGAGAGGGGCCTGTGGAATGAGGAGATGAAG 876796 >seq48 Length=3648740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| ||||| ||||||||||| ||||| ||| ||| || | ||||| Sbjct 3225382 GCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGGCTG 3225441 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 3225442 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 3225501 Query 94936 G 94936 | Sbjct 3225502 G 3225502 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| ||||| ||||||||||| ||||| ||| ||| || | ||||| Sbjct 3235848 GCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGGCTG 3235789 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 3235788 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 3235729 Query 94936 G 94936 | Sbjct 3235728 G 3235728 >seq64 Length=3290765 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || || | |||| || || || |||||||||||||||||| ||||||| | Sbjct 2550602 TGTGGTACGCCATCATTGAGTCGCAGACAGAAACTGGTACACCATACATGGTTTACAAGG 2550661 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 | ||||| ||| |||||||||||| | || |||| ||||| |||||| | Sbjct 2550662 ATGCCTGCAACAGAAAGAGTAATCAGCAAAACCTGGGCACCATCAAATCCAGCAATCTGT 2550721 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 | ||||| ||| | || | || |||||||||| Sbjct 2550722 GCACAGAGATCGTAGAGTACACGAGCAAAGATGAG 2550756 >seq28 Length=5070235 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCT 94874 || ||||| ||| || || ||||||||||||||||| || ||| ||||| || ||||| Sbjct 3408817 GCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATT-TGCTGCTATCTACTGGCT 3408875 Query 94875 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 |||||| | || || ||||| || || ||| |||||||||||| || Sbjct 3408876 GAAGAAGAGGGGGCTAATGCCTGGCCTTAGCTACTCCAACGAGCTCAT 3408923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583208044060640