Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq117 203 4e-47 seq48 84.2 2e-11 seq232 82.4 8e-11 seq5 82.4 8e-11 >seq117 Length=2128962 Score = 203 bits (224), Expect = 4e-47 Identities = 526/785 (67%), Gaps = 30/785 (4%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC--ACGCGTGTCCGTGAGACGTA 53250 ||||| | || || |||| |||||||| |||| || | || ||| ||||| || Sbjct 878252 TCATGAGGGTGGCTGTGGGAATCCACGG-GACGGATATCGAAGCA-GTCATCGAGACCTA 878195 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || | || | |||| || || |||||| | || ||||| ||||| ||||| || Sbjct 878194 CAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAAC 878135 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 || || ||| |||| |||||||||||| | || |||||||||||| ||||| || Sbjct 878134 CAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGG 878075 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 |||||||| ||||| ||| | || |||| ||||||||| | | || || || || | Sbjct 878074 GATCTACGACACGCTGAAGCATTGCGCCCTCATCTCCAAATCAGCTGGAGGGATTGGCGT 878015 Query 53431 -CCA--CTGCTCGA--ACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTC 53485 || | ||| | | ||| | | | | || ||| || || |||||| Sbjct 878014 GGCAGTCAGCTGCATTAGATCCACGGGGA-GCTAC----ATCGCCGGCACCAACGGCTGT 877960 Query 53486 GCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAG 53545 || | || |||| || ||| | | || | ||||||||| || || || || | ||| Sbjct 877959 TCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTATGTTGATCAG 877900 Query 53546 GGTGGTGGGAAGCGCAAG----GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 || ||| | | ||| || | |||||||| ||||| ||||| |||||| ||| Sbjct 877899 GG----GGGGAACAAAAGACCTGGCGCCTTCGCCATGTACCTGGAGCCCTGGCACTTCGA 877844 Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGA 53661 | | || || || |||||| ||| ||| | || ||| ||| | | || Sbjct 877843 TGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAGCCAGGGA 877784 Query 53662 CCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 |||||| ||| || |||||||| || |||||||||||| | ||||||||| |||| | Sbjct 877783 CCTGTTCTAC-GCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACAACGAAG 877725 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAG 53779 | |||| ||||||||| ||| ||| |||||||| || | | ||| || || |||||| Sbjct 877724 ACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGAGTG-CTGGGGGGAGGAG 877666 Query 53780 TTTAACGAGATGT--ATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGG 53837 ||| | || | | | | || | | || |||| | ||| ||| |||| Sbjct 877665 TTTGAAGAACTCTACACCAGATATGAGAAG--GAGGGGAGGGTGAAGCGTGTGGTGAAGG 877608 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 | | || | ||| |||||||| || || ||| || || || |||||||||||| Sbjct 877607 CTCAGCAGCTTTGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTACATGG 877548 Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGA 53957 |||||| ||| | |||| ||||||||||||| |||| | ||| |||||| | | Sbjct 877547 TCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGTGCA 877488 Query 53958 GCAAC 53962 ||||| Sbjct 877487 GCAAC 877483 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| || | |||||||| || || || || || |||||| |||||||||||||| | Sbjct 876976 CCTGCTGCTGTCCCCAATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 876917 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| | ||||| | |||||||||| |||||| || | || |||||| || Sbjct 876916 CATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGAT 876857 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG-CAGA 55643 ||||| ||||| |||| |||||| |||| Sbjct 876856 CGTCAACCCCCACCTGCTCAAAGACCTGACAGA 876824 >seq48 Length=3648740 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 3226385 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 3226326 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| |||||||||| Sbjct 3226325 AAGTCAAAAGGGTTCT 3226310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 3234845 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 3234904 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| |||||||||| Sbjct 3234905 AAGTCAAAAGGGTTCT 3234920 >seq232 Length=945753 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || ||||| || || ||| | || ||||| || || Sbjct 875281 GTGAAGATGTAACGAGGACTGGCTGCATCTTTTCCTCCATTGATGCGAGTACCAAACTGA 875340 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||||| || || ||||| ||||||| |||||||||||| || |||| ||| || Sbjct 875341 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGTGCCAGGTTCACT 875400 Query 117425 ATCGT 117429 || || Sbjct 875401 ATGGT 875405 >seq5 Length=8431048 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 117440 CTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACC 117499 ||| |||| ||||||||||| |||| | ||| ||||| |||| |||||||| |||||| Sbjct 556020 CTCACCTCTCCATGGTGATAGGCCGACATCTCAGCCACTGAGCCTGCCAGCTGTGCCACC 555961 Query 117500 TTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGC 117559 |||| ||| | | |||| |||||| || || | |||||| | ||||| ||| Sbjct 555960 TTCACCTCTCGCTTGTCGTTCCTCTTGAAACAACAGTACAACACCTTCCTCTGACCTGGT 555901 Query 117560 TTCAGACC 117567 ||||| || Sbjct 555900 TTCAGTCC 555893 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACC-TGCCAGCCGCGTTCCAAACTG 152087 |||||||||||||| | |||||| | ||||||||||| ||| | | | ||||||||||| Sbjct 556504 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCGTGCAATCTG-GTTCCAAACTG 556446 Query 152088 T-CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142 | ||||| |||| | ||| || | ||||||| ||||| || ||||| || ||| Sbjct 556445 TCCCAGA-GGCTGCAAGAGATTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAA 556391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547166504312800