Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq117 199 5e-46 seq249 150 2e-31 seq80 116 4e-21 >seq117 Length=2128962 Score = 199 bits (220), Expect = 5e-46 Identities = 562/853 (66%), Gaps = 19/853 (2%) Strand=Plus/Plus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTGC 80965 || ||||||||||| || |||||||| || || |||| ||||||||||||||||| Sbjct 877421 GAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTA--CTCGACGATTTCCGTGC 877478 Query 80966 ACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGT 81025 | | || |||| || || ||||| || | |||||| ||| |||||| || | Sbjct 877479 AGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCAT 877538 Query 81026 CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAA 81085 | |||||| ||||||||| || ||||| || ||| |||| || ||| || | ||||| Sbjct 877539 CTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAAA 877598 Query 81086 TCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAG 81142 || | ||||| ||||| ||| | | || || | |||| ||| ||| Sbjct 877599 GCTGCTGAGCCTTCACCACACGCTT---CACCCTCCCCTCCTTCTCATATCTGGTGTAGA 877655 Query 81143 CTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 ||| || |||| | || ||| || | ||||| ||| || ||||||| Sbjct 877656 GTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCA 877715 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 || |||||| || |||||| || ||||||||| |||||||||||| |||||| Sbjct 877716 GGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGT 877775 Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||||||||| | | ||| |||||| | ||| ||| || ||| || |||| Sbjct 877776 AGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 877835 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC----CTTGCGACGG 81378 | | | || ||||| |||||||| |||| ||||| | || ||| | Sbjct 877836 CAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCAGGTCTTTTG-TTC 877894 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 || ||||| | || ||||| || || ||| | || | |||||| |||| || || Sbjct 877895 CCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCG 877954 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA 81498 | || ||||| || || |||| |||| ||| | | ||||| || Sbjct 877955 TTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCC 878014 Query 81499 AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 | || || || || | | || || || | || || | |||| || || || || Sbjct 878015 ACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATC 878074 Query 81559 CCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTT 81618 ||||||||||| || | |||||| | |||| ||| ||||| |||| ||| || || || Sbjct 878075 CCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTG 878134 Query 81619 GAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678 | || |||||||| || || |||| ||||| |||| | | ||||| ||||| Sbjct 878135 GTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTG 878194 Query 81679 TAGGTTTCCTTGAC-GCGTGGAATAT-CGTCACCGTGAATACCGATAGCTACACGCATAA 81736 ||||| || |||| || | | |||| |||| ||||| || || | ||| || | ||| | Sbjct 878195 TAGGTCTCGATGACTGCTTCG-ATATCCGTC-CCGTGGATTCCCACAGCCACCCTCATGA 878252 Query 81737 ACATGTACTGGGG 81749 ||||| ||| || Sbjct 878253 GCATGTGCTGCGG 878265 >seq249 Length=855460 Score = 150 bits (166), Expect = 2e-31 Identities = 171/228 (75%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || ||||| ||||||||| | || Sbjct 398198 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACTCTGGAGGTTGAGCCCAGT 398257 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || |||||||| ||||| ||||| ||||| || || || || |||||| Sbjct 398258 GACACCATTGAGAACTTGAAGGCCAAAATCCAGGATAAGGAAGGCATCCCCCCTGACCAG 398317 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA- 27584 ||| | || || |||||||| ||||| || || |||| | ||||| | ||||| || Sbjct 398318 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCACACCCTCTCTGACTACAAC 398377 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| | ||||| || || || ||||| ||||| | ||||| Sbjct 398378 ACTCCA-----ACTCCACCCTCCACCTTGTCTTACGTCTCAGAGGTGG 398420 >seq80 Length=2822622 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || ||||| || |||||||| || || |||||||||||| | | Sbjct 766647 ATGCAGATCTTTGTGAAAACGCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 766588 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| ||||| ||||||||||| || ||||| || |||||| Sbjct 766587 GACACCATCGAGAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 766528 Query 27526 CAGCGTCTAATTTTTGC 27542 ||| | || || ||||| Sbjct 766527 CAGAGGCTGATCTTTGC 766511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570258815424320