Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq249 149 1e-30 seq80 113 1e-19 seq1 98.7 2e-15 >seq249 Length=855460 Score = 149 bits (164), Expect = 1e-30 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGA-TGTTATAATCCGCAAGGGTCCTTCCAT 210960 || ||||||||| || ||||| | |||| |||| || || | ||||| |||| Sbjct 398406 TAAGACAAGGTGGAGGGTGGAGT-----TGGAGTGTTGTAGTCAGAGAGGGTGTGGCCAT 398352 Query 210961 CTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGT 211020 |||||||||||||||| || ||||| || | || |||||||| || | |||||||| | Sbjct 398351 CTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTAT 398292 Query 211021 CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCG 211080 ||||||| || |||| ||| || ||||||||| | |||||||| |||||||| | Sbjct 398291 CCTGGATTTTGGCCTTCAAGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGG 398232 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || ||||| ||||| ||||| | |||||| Sbjct 398231 TCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 398198 >seq80 Length=2822622 Score = 113 bits (124), Expect = 1e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| || ||||| || | || |||||||| |||| || ||||| |||||| Sbjct 742253 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGG 742312 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || || || || || ||||||||| | ||||||||||||||||| ||||| Sbjct 742313 ATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTA 742372 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || ||||| | |||||| || Sbjct 742373 CCAGTTAGGGTTTTCACAAAGATCTGCATGTT 742404 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| || | || |||||||| |||| ||||||||||||||||| || ||| Sbjct 766511 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTC 766570 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| ||||||||||| | |||||||| || ||||| ||||| || ||||| || Sbjct 766571 ACGTTCTCGATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGCGTT 766630 Query 211098 TTTACAAACACCTGCATTTT 211117 || ||||| | |||||| || Sbjct 766631 TTCACAAAGATCTGCATGTT 766650 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 765077 AGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 765136 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTC 211000 |||||||||||||| || ||||| || | || ||||| Sbjct 765137 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 765174 >seq1 Length=12616905 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||||||||||| |||| ||| ||| ||||| |||||| Sbjct 12157557 GGCAGAGGAGGACAGTCTGCTCTGCGTTTTGCTCGACTGAGAATGGAGAAGAGACACAAC 12157616 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 || |||||||||| || |||| || | ||| ||| | ||| |||| |||| | Sbjct 12157617 TATGTGAGAAAAGTAGCTGAGACAGCTGTCCAGCTCTTTGTGTCCAATGACA--AAGT-T 12157673 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || |||||||| | ||| | ||| Sbjct 12157674 AATGTGGCAGGAATGGTCTTGGCTGGCTCTGCTGATTTCAAGACTGAACTCAGCCAGTCT 12157733 Query 139999 GACTTTTTTGACCC 140012 ||| | ||||| || Sbjct 12157734 GACATGTTTGATCC 12157747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159044533569140