Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3669 136 3e-27 seq87 136 3e-27 seq224 123 2e-23 seq928 111 1e-19 seq159 105 5e-18 >seq3669 Length=3222 Score = 136 bits (150), Expect = 3e-27 Identities = 197/278 (71%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 69040 TTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATA 69099 |||||||||| | || ||||| ||||| | ||||| || |||||||| || || Sbjct 820 TTGAGGACACCGTTTACAAAGATTATCCTGCTGATGTGAATGGCTGGGGAAAATTCTACC 879 Query 69100 TCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTG 69159 | || || | || || ||||| || || || ||| ||| | ||| | || | Sbjct 880 TTCCAACGACTGTAACCATGCAAGTTATTGGCGTGGTGGAGGGCATCTCATGTCTGTGCG 939 Query 69160 ACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGC 69219 ||||||| || |||||||||||| ||||| | ||||||| |||||||| ||||| |||| Sbjct 940 ACCAGCTCGTTCTGATGACCTGCAAGGACAAACAGGTGTATGGCTATGATGGAGAGGAGC 999 Query 69220 TGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCAT 69279 | ||| |||||||| | | | ||| | || |||||||| | ||||| |||| Sbjct 1000 TTCATCTGGTGGCTTCAAGCATCAAGCAGCTACTTGATGAAGGAATGGAGTATCCAGCAT 1059 Query 69280 TCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317 | ||| ||| || | ||||||||||||||| | ||| Sbjct 1060 CCAAGACCTACTACAAGGGGGAGGCCTTCAAAGACATG 1097 >seq87 Length=2632686 Score = 136 bits (150), Expect = 3e-27 Identities = 136/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| ||||||||||| || || |||||||| ||||| || ||||| ||||| ||||| Sbjct 460176 CATGTCTGTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTC 460117 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 |||||||| |||| ||| || ||||||| |||| | || |||||||| || Sbjct 460116 ACCCTCTTCTCTGTCAGTGAACCCAAGGTTGTCCAGGAAGTTCCGAGACCCGTTGGCATC 460057 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 27662 ||||||||| || || || || || ||||| ||||| ||||| || |||| |||| Sbjct 460056 CCAGATCTTCACTCCTTTTTCTGACAGCTCCTTGGAATTTGTTGATCCCTGTGAC 460002 Score = 118 bits (130), Expect = 8e-22 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 27219 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 27278 ||| || |||||||| || || || || |||||||||||||| || || ||||| | || Sbjct 460978 GTGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCGATGTTGAAAGGCACCCCTAATCC 460919 Query 27279 CATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTG 27338 ||| || | || | |||||| ||||||||||| ||||| || |||| ||||| ||||| Sbjct 460918 CATATCAGCAGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCACACGTAGAACTG 460859 Query 27339 ACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 || | |||||||| || || || ||||| Sbjct 460858 GCAGAGTGCGTGGCAGGGGGGCAGCGCCAT 460829 >seq224 Length=1019691 Score = 123 bits (136), Expect = 2e-23 Identities = 194/278 (70%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 69040 TTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATA 69099 ||||||||||| || ||||| ||| | |||||| | ||| |||| || || Sbjct 582630 TTGAGGACACACTTTACAAAGA------TGCTGATGTGAACAGCTGGAGAAAATTCTACC 582577 Query 69100 TCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTG 69159 | || | | | || || ||||| || || ||| ||| ||| | ||| | |||| Sbjct 582576 TTCCAAACACTGTAACAATGCAAGTTATTGGTGTGGTGGAGGGCATCTCATGTCCCTGTG 582517 Query 69160 ACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGC 69219 ||||||| ||||||||||||| |||||||| ||||||||| |||||| | || |||| Sbjct 582516 ACCAGCTCATCCTGATGACCTGTGAGGACCAACAGGTGTACGCCTATGATGAGGAGGAGC 582457 Query 69220 TGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCAT 69279 | ||| |||||||| | | | ||| | || || ||||| | ||||| |||| Sbjct 582456 TTCATCTGGTGGCTTCAAGCTTCAAGCAGCTATTTGATGAGGGAATGGAGTATCCAGCAT 582397 Query 69280 TCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317 | ||| ||| || | ||||||||||||||| | ||| Sbjct 582396 CCAAGACCTACTACAAGGGGGAGGCCTTCAAAGAAATG 582359 Score = 95.1 bits (104), Expect = 9e-15 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 69155 ATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGA 69214 |||||||||||| | |||||||||| |||||||| ||||||||| |||||| | ||| Sbjct 628417 ATGTGACCAGCTCATTCTGATGACCTTTGAGGACCAACAGGTGTACGCCTATGATGAAGA 628476 Query 69215 CGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCC 69274 ||||| ||| |||||||| | | | ||| | || || ||||| | ||||| Sbjct 628477 GGAGCTTCATCTGGTGGCTTCAAGCTTCAAACAGCTATTCGATGAGGGAATGGAGTATCC 628536 Query 69275 TGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATAT 69316 |||| | | | ||| || | |||||||| || ||| |||| Sbjct 628537 AGCATCCAAAACCTACTACAAGGGGGAGGCTTTTAAAAATAT 628578 >seq928 Length=49425 Score = 111 bits (122), Expect = 1e-19 Identities = 192/278 (69%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 69039 GTTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTAT 69098 ||||||||||| | || ||||| |||| | ||| ||| |||||||| || || Sbjct 27863 GTTGAGGACACCGTTTACAAAGATTATCCTGATGATGTGGACGACTGGGGAAAATTCTAC 27922 Query 69099 ATCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGT 69158 | || | | || || ||| | || || || ||| ||| | ||| | ||| Sbjct 27923 CTTCCAAAGACTGTAACCATGGAAGTTATTGGCGTGGTGGAGGGCATCTCATGTCTGTGT 27982 Query 69159 GACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAG 69218 |||||||| || ||||||||||| |||||| | ||||||||| |||||| | ||| ||| Sbjct 27983 GACCAGCTCGTTCTGATGACCTGTGAGGACAAACAGGTGTACGCCTATGATGAAGAAGAG 28042 Query 69219 CTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCA 69278 || |||||||||||| | |||| || | | || ||||| ||||| ||| Sbjct 28043 CTTCATGTGGTGGCTTCAAGCATGGAGGAGCTACTTAATGAGGGAATTAATTATCCAGCA 28102 Query 69279 TTCCAGAGCTATTATCATGGGGAGGCCTTC--AAACAT 69314 | | ||| ||| || | |||||||||||| |||||| Sbjct 28103 TCCGAGACCTACTACAACGGGGAGGCCTTCGAAAACAT 28140 >seq159 Length=1471650 Score = 105 bits (116), Expect = 5e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 69040 TTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATA 69099 |||||||||| | || ||||| | | ||||||||||| ||||| || || || Sbjct 1326378 TTGAGGACACCGTTTACAAAGATAATTTTCTTGTGGTGAACGGTTGGGGGAAATTCTACC 1326319 Query 69100 TCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGT-GACGGGAACTCCATACCAATGT 69158 | || | | || || |||||||| || ||| || || || | ||| || || ||| Sbjct 1326318 TTCCGAAGGTTGTAACCATGCAGGTTATTGGTGTGGTCGAGGGCATCTC-ATTCCCGTGT 1326260 Query 69159 GACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAG 69218 || ||||| || ||||||||||| | |||||| |||| || | |||||| | ||| ||| Sbjct 1326259 GAGCAGCTCGTTCTGATGACCTGTGGGGACCAACAGGTATATGCCTATGATGAAGAGGAG 1326200 Query 69219 CTGCATGTGGTGGCT 69233 |||||| |||||||| Sbjct 1326199 CTGCATCTGGTGGCT 1326185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369474613621916