Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq117 417 1e-111 seq64 86.0 9e-12 seq28 84.2 3e-11 >seq117 Length=2128962 Score = 417 bits (462), Expect = 1e-111 Identities = 1273/1952 (65%), Gaps = 39/1952 (2%) Strand=Plus/Plus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| |||||||||| ||||| || | || | || || || || || Sbjct 876794 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 876853 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || ||||| || || || | || | || ||||| || || || || || | || Sbjct 876854 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 876913 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || | || || Sbjct 876914 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 876973 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | |||||| | ||| || || || || ||||| ||||| || Sbjct 876974 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 877033 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | ||| ||||| | ||||| || ||||| || || || | || || Sbjct 877034 TCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCT 877093 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | ||| || || || || ||| || | || | ||||| ||||| || || || | Sbjct 877094 TCATACGTCTCATAGGTGCCGAGCTCGGCGGCCAACTCGCAGCTCGCTTCCAAAGCGGCA 877153 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 ||||| || || || || |||| | || || ||| || || | || ||||| ||| Sbjct 877154 TAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGA 877213 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| | | ||| || || ||||| || | |||||| || || || || || || || || Sbjct 877214 TAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGC 877273 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | | | || || | |||||| | ||||| || || || || |||| || || Sbjct 877274 CGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTC 877333 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 | || ||||||| |||||| |||| | ||| ||| ||| | | | || Sbjct 877334 AAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGCTCA 877393 Query 76256 A---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 | || |||| || ||||| | ||| || ||||| ||||| || ||||| | | Sbjct 877394 GGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGT---CC 877450 Query 76313 TTGGCATATTGTATT-----ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGAT 76367 ||| || |||| | || |||||||| || || || |||||||| || || |||| Sbjct 877451 TTGC--TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGAT 877508 Query 76368 TTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTT 76427 | || ||||||||||| |||| || | || || || | | |||| || || |||| Sbjct 877509 TCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTT 877568 Query 76428 CAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGTAT 76486 | |||| || ||||| || | | ||| | | || ||| || | | | || Sbjct 877569 CTGTCTGCGACTCGATGATTGCATACCAAA-GCTGCTGAGCCTTCACCACACGCTTCACC 877627 Query 76487 CGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCC 76546 | | ||| | |||||| || || | |||||| || || ||||| |||||| Sbjct 877628 CTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCC 877687 Query 76547 AAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTC 76606 | || || || || ||||||||||| ||||| || | | | || ||||| ||| Sbjct 877688 AGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTC 877747 Query 76607 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT 76666 || ||||| ||||| ||||| || || || || || | || || | || || ||| Sbjct 877748 ATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTT 877807 Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726 || || ||||| || || || ||||| || | | ||| | ||||| || || || || Sbjct 877808 CCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTAC 877867 Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786 || || | | || |||| ||| || || |||||||| | ||| | || ||||| || Sbjct 877868 ATGGCGAAGGCGCCAGGTCTTTTGTTCCCCCCCTGATCAACATAACGCGCTGTGTTGTTG 877927 Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846 ||||| ||||||||||| | | ||||| || || || || || | || || | | Sbjct 877928 TAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGC-T 877986 Query 76847 CCACATGCA-CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905 || | || | | ||| || | | | ||| || ||||| || ||| ||||| || Sbjct 877987 CCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAG 878046 Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAG 76965 || || | |||| ||||| ||||| ||||| || || |||||| ||||| || || Sbjct 878047 GGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAG 878106 Query 76966 AAAACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATG 77021 || ||||| |||| || || || ||||| ||||| || | || || || | Sbjct 878107 GAAGCAGCTGGACAGCTGCGGCCTGTTG----GTTCCAGCATTGAAGAGGGTCGGGGAGG 878162 Query 77022 CATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCC 77081 | || |||||||| || || || || || ||||| || || || |||||||| |||||| Sbjct 878163 CGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCG 878222 Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTAT 77141 || ||||| ||||| || | ||| | ||| ||||| || || || | || Sbjct 878223 TCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGC 878282 Query 77142 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 77201 ||| || || | || ||| || |||| ||| || || ||||| ||||||| || | Sbjct 878283 CATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGA 878342 Query 77202 AGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCA 77261 | ||||| || || || || |||| || || ||| || | | |||||| || Sbjct 878343 AATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTC-- 878400 Query 77262 TGACAGTG---GTAGAAATAATTGGAGA-TCGTATTCCATTTTTA--GGATTAACATAGT 77315 || ||| | ||||| || | || | | || | || | || || | |||| Sbjct 878401 -GAGTGTGTCTTTCGAAATCATGGAGGAGTGGCGTT---TGTTCAGGGGGTTGATGTAGT 878456 Query 77316 TAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATA 77375 | | | ||| ||||| |||||||| || | || || || || ||||| | || || | Sbjct 878457 TGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGA 878516 Query 77376 CGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTA 77435 |||| || | || || || || || ||||| || | | || ||| ||||| || | Sbjct 878517 CGGCGATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGA 878576 Query 77436 TTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAA 77495 | || ||||| | || || | || | ||| || || ||| | || | || || || | Sbjct 878577 TCTCCGCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGA 878636 Query 77496 CTTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTC 77555 | ||||| | || | | || || |||||||| |||| | || || || || ||| Sbjct 878637 CCTTCATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTC 878695 Query 77556 T-AATACGAGATGTGATTTTATCAAACATGAC 77586 | || |||||||||||||| || |||||||| Sbjct 878696 TGGATGCGAGATGTGATTTTGTCGAACATGAC 878727 >seq64 Length=3290765 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || || |||| ||||||||| || ||||||||||| || || || || | ||| Sbjct 2549585 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 2549526 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || || ||||| |||| || || || | || |||||| || || | || | ||| | | Sbjct 2549525 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 2549466 Query 77114 ATATGCTGAGGTCGTTC 77130 || ||||| ||||| || Sbjct 2549465 ATGTGCTGGGGTCGCTC 2549449 >seq28 Length=5070235 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| || ||||| | ||||| || | | || ||||||||||| || | ||| || Sbjct 3408935 TCATCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAGCCCCCTCTTCTTC 3408876 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| | ||||| || || || ||||| ||||| |||||||| ||||| || || || Sbjct 3408875 AGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAGCC 3408816 Query 46774 ACAA 46777 |||| Sbjct 3408815 ACAA 3408812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712869915083520