Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 5e-13 >seq12 Length=6316961 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || ||||| || || |||||||| |||||||| |||||||| ||||| || || Sbjct 2155105 ATATATGTGTCAATAAGCAAGCTGTACATCTCTGAGTGAATGTTCTCCATGGCAATTTGG 2155164 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570 || ||||||||||| || ||||| | | ||| || ||| Sbjct 2155165 AAGCCATAGAAGCAACGTGCCTCTGTCACTTGCACCTCC 2155203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||||||||| || ||||| || || | ||| ||||| || | |||||| Sbjct 2154513 TCATCTCTGCTGATAAGCTCATTGGAGAACGTGAGCCCAGGCATGAGGCCCCTCTTCTTT 2154572 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | |||||| || |||||||| || || || || || || ||||| |||| ||||| || Sbjct 2154573 AGCCAGAAGATAGCAGCAAAAGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGGC 2154631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509601960151760