Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq58 95.1 1e-14 >seq58 Length=3746050 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/154 (74%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || ||||| ||||| || || || ||| ||| | || || || |||||||||| Sbjct 1800552 TCCAGCCATAAAAGTGCATGCTAGTGAGCTTGCCGTAATTGGGCTCGGCAATATGGATAT 1800493 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || ||||| || ||||| || || || || |||||||| || |||| | || Sbjct 1800492 TGAGGGACTGGCTTTGGTCAATGAAAGCCCCTCTATCAGCAGCCATCTTAATGACCACCT 1800433 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 53027 | || | ||| ||||| | ||| ||||| ||||| Sbjct 1800432 TCTGAGAAATCTCCCACACAGTCTTATACAACTC 1800399 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | ||||||||||| || || |||||||| || || || || ||| Sbjct 1796381 GTGCCTGCATTGAAGAGTGTAGGAGAAGCATGAGTGAACCATTTCTCTGACAGCAGGTTG 1796322 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || ||||| || || | | |||||| || ||| || || |||||||| | ||| | | Sbjct 1796321 TAGGTCTCAATGGCAGCAGCAATATCCTCTTTATGGATCCCAACTGCGACTCTCATCAGC 1796262 Query 54545 ATGTGCTGAGG 54555 ||||||||||| Sbjct 1796261 ATGTGCTGAGG 1796251 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | || || || || || || ||||| ||||| || || | || || || | Sbjct 1795618 CACTGAAGACCTTCTTAGTCTCCTTATGCAGATTGGATACAGCGATGCGGGCTGCCAGGA 1795559 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 |||||||||| || |||| || || ||||| || | || || | ||||||||||| Sbjct 1795558 TGGCATAATCAGGGTGTTTAGTGGTGAGGGTGGCAGCGGTCTCTGCAGCCAGAGTGTCCA 1795499 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941 ||| || || || || ||| | |||| || ||||| |||||||| | |||| Sbjct 1795498 GTTCAACAGTGGTCACACCACTGTATAGGCCCTGGATCACCTTCATTGTGATTT 1795445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591617465492640