Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq7 109 7e-19 seq431 89.7 6e-13 >seq7 Length=7868470 Score = 109 bits (120), Expect = 7e-19 Identities = 194/277 (70%), Gaps = 12/277 (4%) Strand=Plus/Plus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 ||||||| || |||| ||||||||| || ||||| ||||||||||| | ||| ||||| Sbjct 473654 CCGTCAGGGCCGACCAGGAACTTCTCAAAATTCCACGCCACGTCGTTCCTGCAGACTGGG 473713 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCA-CGAGCGTGCTCAT---GTCGTCGCTAGGCGC 83241 |||| ||||| || |||||| |||| | || || ||| || |||||| || Sbjct 473714 CTCCAGATAATGAACTTGGGGTCACTCATCAAG---GC-CATGGAGTTGTCGCTGGGGTA 473769 Query 83242 CGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCG 83299 || || ||| ||| | |||| | ||||| || | ||| || ||||| ||| Sbjct 473770 TGGAAGATTCTCCTTGAGGTACACGAACAAGGGATGGGCATCTTTG--CCATTGACATCG 473827 Query 83300 CACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGG 83359 |||||| | || ||| ||||||||||| ||||| ||||| |||| ||||||| Sbjct 473828 ACCTTCTCCAGAAGTGAGAAGCGAGGCTCGAAGCCATTCCCTGGACGCACGTACTTCAGG 473887 Query 83360 GAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGT 83396 | | |||||| | |||| | |||| ||||||| Sbjct 473888 CAGTTGAGGATCTCTTCGTTCTTGCCGTTCTCCTGGT 473924 Score = 109 bits (120), Expect = 7e-19 Identities = 112/145 (77%), Gaps = 10/145 (7%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCC-----CGAGCTCC 83445 ||||||| ||||||||||| || || | || ||||| || |||||| |||| | | Sbjct 474837 CCTGGTGGCCGAACTGGTTGCAGGGCACTCCCAGCACCACGAGCCCCTTGTCCGAG-TAC 474895 Query 83446 TAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 | |||| || |||||||||||||||||||| |||| |||||| |||||||||| || Sbjct 474896 TTGGCG----TGGAGCTCGTTCATCTGAGTGTAGTCCCTGACCGTCGTACCTCAGAGAGA 474951 Query 83506 CGCTACGTTCTCGATGAGCAAGACC 83530 ||| || || || || |||| |||| Sbjct 474952 CGCCACATTTTCAATAAGCACGACC 474976 >seq431 Length=579176 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||||| |||||||||||||| ||||| || || || ||||||| | || || Sbjct 533868 CCTGGTAGCCGAACTGGTTACAGGGGAAACCCAGGACCACCAGCCG--GTGCGGGTACCT 533925 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || ||| |||| ||| | ||| |||| ||||||| || | |||||||||||||||| Sbjct 533926 GCT-CTGGAGCTGGTTGAGCTGGCTGTAGTCCCGGATGGTCGTCCCTCAGAGGGACGCTA 533984 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 | ||||| || |||| || || || || |||| Sbjct 533985 CATTCTCAATAAGCACCACTCGTCCTCGGAAGA 534017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606639239360720