Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq30 105 6e-18 seq241 100 2e-16 seq82245 98.7 8e-16 seq155987 95.1 1e-14 >seq30 Length=4849498 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| ||||| || || | || || | ||| | |||||||||||||| ||||| ||||| Sbjct 2501551 GTTGCCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTC 2501610 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||||| | | || |||||||| ||||| ||| | || || | ||||||||| Sbjct 2501611 AGAAAGGGTACGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 2501670 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||| || || || ||||| || || | | | || |||| |||||| Sbjct 2501671 TGGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTC 2501730 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | |||| |||||||||||| || || | ||| || ||||| || ||||| Sbjct 2501731 CACCTCCAGGGTAATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2501781 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | |||||| || || |||||||| ||||| | ||||| | | ||| Sbjct 2501798 AGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAGAGGGTGCGTCCATCC 2501857 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || || | ||||||||| || | ||| || || || Sbjct 2501858 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCT 2501917 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | | || |||| ||||||| |||| ||| |||||| Sbjct 2501918 TGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2501977 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | ||| || ||||| || ||||| Sbjct 2501978 TTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | |||||| || || |||||||| ||||| | ||||| | | ||| Sbjct 2502026 AGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCC 2502085 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || || | ||||||||| || | || || || || Sbjct 2502086 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATACCCTCTTTATCT 2502145 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | | || |||| ||||||| |||| ||| |||||| Sbjct 2502146 TGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2502205 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | ||| || ||||| || ||||| Sbjct 2502206 TTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 >seq241 Length=1227248 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| || ||||| ||||| | |||||| | | || Sbjct 301102 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 301043 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || ||||||||||| || | |||||| ||||| Sbjct 301042 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCC 300983 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | || |||| ||||| || | ||| |||||| Sbjct 300982 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTC 300923 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT-TTGAATCT 21184 ||||| || | || || || || || |||||| || ||||| Sbjct 300922 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATTGTTTAATCT 300881 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| || ||||| ||||| | ||||| | | || Sbjct 301330 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGACCATCT 301271 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || ||||||||||| || | |||||| ||||| Sbjct 301270 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCC 301211 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || || | ||||| || | ||| |||||| Sbjct 301210 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTC 301151 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 301150 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 301119 >seq82245 Length=399 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| || ||||| ||||| | |||||| | | || Sbjct 313 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 254 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || ||||||||||| || | |||||||||||| Sbjct 253 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 194 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || || | ||||| || | ||| |||||| Sbjct 193 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTC 134 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 133 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 >seq155987 Length=309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| || ||||| ||||| | |||||| | | || Sbjct 66 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 125 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || ||||||||||| || | |||||| ||||| Sbjct 126 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCC 185 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || || | ||||| || | ||| |||||| Sbjct 186 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTC 245 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 246 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420800135852888