Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq155987 154 2e-32 seq241 152 5e-32 seq82245 149 6e-31 seq30 125 7e-24 seq202961 93.3 4e-14 seq2 89.7 5e-13 seq12 87.8 2e-12 >seq155987 Length=309 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | | Sbjct 277 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 218 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | |||||||| ||||| || | ||||| Sbjct 217 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCA 159 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 158 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 99 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || ||| |||| | ||||||||| Sbjct 98 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGGC 50 >seq241 Length=1227248 Score = 152 bits (168), Expect = 5e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || ||||| || || ||||| ||||| ||||||||| | || || || | Sbjct 300887 AACAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCC 300946 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | | |||||| || || | |||||||| ||||| || | || Sbjct 300947 AAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGA 301006 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| ||| ||||| |||||||| || | |||||||| |||||| Sbjct 301007 CCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTA 301066 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| || || || ||| |||| | ||||||||| Sbjct 301067 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGGC 301118 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | | Sbjct 301119 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 301178 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | |||||||| ||||| || | ||||| Sbjct 301179 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCA 301237 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| |||||||| || | |||||||| |||||||| Sbjct 301238 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTATCTGACTACAA 301297 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || ||| |||| | |||||||| Sbjct 301298 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGG 301345 >seq82245 Length=399 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | | Sbjct 102 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 161 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 162 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 220 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 221 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 280 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || ||| |||| | ||||||||| Sbjct 281 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGGC 329 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| |||||||| || | |||||||| ||||||||||||||||||| Sbjct 3 ATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAACATCCAGAAG 62 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| |||| || || || ||| |||| | ||||||||| Sbjct 63 GAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGGC 101 >seq30 Length=4849498 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || || || ||||| ||| | || || || ||| Sbjct 2501781 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATTACCCTGGAGGTGGAGCCCAGT 2501722 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| || ||||||||||| || | ||||| Sbjct 2501721 GACACCATTGAGAACG-TCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGACCA 2501663 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | || ||||| |||||||| Sbjct 2501662 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTTTCTGACTACAA 2501603 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| |||||| |||| || ||||| || |||| Sbjct 2501602 CATCCAAAAGGAGTCCACCCTCCATCTTGTTCTGCG 2501567 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || || || ||||||||| | || || || ||| Sbjct 2502009 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 2501950 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| || ||||||||||| || | |||||| Sbjct 2501949 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGACCAG 2501890 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || |||||||| || | ||||||||| ||||||||| Sbjct 2501889 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGCACCCTCTCTGACTACAAC 2501830 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || |||| || ||||| || |||| Sbjct 2501829 ATTCAGAAAGAATCCACTCTCCATCTTGTCCTGCG 2501795 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || ||||| || || || |||||||| | || || || | Sbjct 2502469 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACTCTGGAGGTGGAGCC 2502410 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | |||||| || |||| || ||||||||||| || | || Sbjct 2502409 CAGTGACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCACCTGA 2502350 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || || |||| || ||||| || |||| || | ||||||||| ||||| Sbjct 2502349 CCAACAGCGTCTGATCTTTGCTGGCAAGCAATTGGAGGATGGTCGCACCCTCTCTGACTA 2502290 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| || |||| || ||||| || |||| Sbjct 2502289 CAACATCCAGAAAGAATCCACTCTCCATCTTGTCCTGCG 2502251 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || || || ||||||||| | || || || ||| Sbjct 2502237 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 2502178 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| || |||||||| || || | |||||| Sbjct 2502177 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAAGAGGGTATTCCACCTGACCAG 2502118 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || |||||||| || | |||||||| ||||||||| Sbjct 2502117 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGCACCCTTTCTGACTACAAC 2502058 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || |||| || ||||| || |||| Sbjct 2502057 ATTCAGAAAGAATCCACTCTCCATCTTGTCCTGCG 2502023 >seq202961 Length=268 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| |||||||| || | |||||||| ||||||||||||||||||| Sbjct 3 ATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAACATCCAGAAG 62 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| |||| || || || ||| |||| | ||||||||| Sbjct 63 GAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGGC 101 >seq2 Length=9864463 Score = 89.7 bits (98), Expect = 5e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 |||||||| || || ||||| || ||||| ||||| ||| ||||||||| ||||| || Sbjct 2385295 CGGTTCGTCATCTTTCCCATTCAGTACCCCGACATCTGGAAAATGTACAAACAGGCCCAG 2385354 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || || ||||||||||| ||||||||| Sbjct 2385355 GCCTCATTCTGGACCGTAGAGGAGGTG 2385381 >seq12 Length=6316961 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||||||||| ||| | ||||| || |||||||| ||||| || Sbjct 2155221 GGTGGAGCGCTTCATGCAGGAGGTGCAAGTGACAGAGGCACGTTGCTTCTATGGCTTCCA 2155162 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 || |||||||||||| | ||||| || ||||| Sbjct 2155161 AATTGCCATGGAGAACATTCACTCAGAGATGTA 2155129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513393276035680