Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq82245 113 3e-20 seq155987 107 1e-18 seq241 107 1e-18 seq30 89.7 3e-13 >seq82245 Length=399 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | || | |||||||||||| | || || ||||| ||||||||||||||| Sbjct 328 CCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 269 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || |||| ||||||||| || Sbjct 268 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGA 209 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | || | ||| | | || || Sbjct 208 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACC 149 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || ||||| ||||||||||| Sbjct 148 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 >seq155987 Length=309 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | || | |||||||||||| | || || ||||| ||||||||||||||| Sbjct 51 CCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 110 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || |||| ||||||||| || Sbjct 111 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGA 170 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| ||| | | | || | ||| | | || || Sbjct 171 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACC 230 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || ||||| ||||||||||| Sbjct 231 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 277 >seq241 Length=1227248 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | || | |||||||||||| | || || ||||| ||||||||||||||| Sbjct 301117 CCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 301058 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || |||| ||||||||| || Sbjct 301057 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGA 300998 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| ||| | || | || | || | | || || Sbjct 300997 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACC 300938 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || ||||| ||||||||||| Sbjct 300937 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 300891 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| | || | |||||||||||| | || || ||||| ||||||||||| || Sbjct 301346 TCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 301287 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || |||| ||||||||| ||||| || |||| ||||||||| || Sbjct 301286 TAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGG 301227 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || ||||| ||||| ||| | | | || | ||| | | || || Sbjct 301226 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAAC 301167 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || ||||| ||||||||||| Sbjct 301166 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 301119 >seq30 Length=4849498 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| || || || | ||| ||||||||| ||||||||||| || || || | || Sbjct 2502253 CAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATC 2502312 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||| || || || || ||||| ||||| || | || ||| || || Sbjct 2502313 CTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTGGAATGCCCTCTTTATC 2502372 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 2502373 TTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 2502432 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || |||||||||||||||||| Sbjct 2502433 CTTACCAGTCAGCGTCTTCACAAAGATCTGCATC 2502466 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| || || || | ||| ||||||||| ||||||||||| || || || | || Sbjct 2501797 CAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAGAGGGTGCGTCCATC 2501856 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || || || || || ||||||||||| || | || ||| || || Sbjct 2501857 CTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATC 2501916 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 2501917 TTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 2501976 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || ||||||||||||||||| Sbjct 2501977 CTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502009 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| || || || | ||| ||||||||| ||||||||||| || || || | || Sbjct 2502025 CAGGACAAGATGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATC 2502084 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || || || || || ||||||||||| || | | ||| || || Sbjct 2502085 CTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATACCCTCTTTATC 2502144 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 2502145 TTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 2502204 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || ||||||||||||||||| Sbjct 2502205 CTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 2502237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321955664886080