Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 6e-12 seq12 82.4 7e-11 >seq2 Length=9864463 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 16268 CTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAAT 16327 || || | ||| ||||| ||||||| || ||||| || |||| ||| || | ||| | Sbjct 2389683 CTGATGAGCTCATTTGAGTATGTAAGTCCGGGCATCAGACCTCTTTTCTTTAACCAGTAG 2389624 Query 16328 ATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGC 16387 || ||||||||||| || || || || || ||||| ||||| |||||||| | || || | Sbjct 2389623 ATGGCGGCAAATGACCCCGAGAAAAAGATGCCTTCTACTGCCGCAAATGCGATCAGTCTC 2389564 Query 16388 TCACC 16392 || || Sbjct 2389563 TCCCC 2389559 >seq12 Length=6316961 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| |||| || | ||| || ||||||||||| || ||||| ||||||||||||||| Sbjct 2154136 CCCAACTCCAGCATCAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAAATCACAG 2154195 Query 16109 TTCATTCCTATTAATTTAACAGG 16131 ||||| || || | |||||||| Sbjct 2154196 TTCATGCCAATCAGCTTAACAGG 2154218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460872869034800