Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq140 311 6e-80 seq45 116 3e-21 >seq140 Length=1959537 Score = 311 bits (344), Expect = 6e-80 Identities = 612/887 (69%), Gaps = 20/887 (2%) Strand=Plus/Minus Query 107692 TGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTG 107751 |||| || || ||| ||| || |||||||| ||||| |||||| ||||||||||||||| Sbjct 1123932 TGAGCAAGGAGGAGAGAGATTTTCCCATTGCTTACTCCATGGTGATCCATGAGAAGATTG 1123873 Query 107752 AAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACG 107811 ||| ||||| |||| |||||||| | ||| | |||||||| |||||||||| || | Sbjct 1123872 AAATGTTTGAGAGGCTCTTGCGAGCCATTTATTCTCCTCAGAATGTATACTGTGTTCATG 1123813 Query 107812 TGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCC 107871 |||| ||||| | || |||| ||||| ||||| || ||||| || | || ||||| | Sbjct 1123812 TGGACCTGAAGACACCTGAGATCTTCAAGGAGGCTGTAAAGGCTATCGTGTCATGCTTTC 1123753 Query 107872 CCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGC 107931 |||| || || |||||||||| ||| ||| | |||||||||||||| |||| | Sbjct 1123752 CCAACGTGTTTGTGGCCAGTAAACTGGAGAGTGTGATCTATGCCTCCTGGTCTCGAGTTC 1123693 Query 107932 AAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA-TGGAAGTACTTA 107990 |||||||||| || || ||| ||| | ||| || ||| | ||| |||| ||| | Sbjct 1123692 AAGCTGACCTCAATTGCATGCGGGACCTTCTCAAGT-CTCCGGTCCAGTGGAGGTATCTG 1123634 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || || |||| |||||||| || |||||||| || ||||| | | | || Sbjct 1123633 CTTAACACCTGTGGTGCAGATTTCCCCATCAAAACCAATGCAGAAATGGTTCAGTCTCTG 1123574 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 || | | || || | |||||||||||| || |||| | | | | ||||||| Sbjct 1123573 AAACTTCTCAATGGAAGGAACAGTATGGAATCAGAGGCCACAAATAACTACAAAAAAGGG 1123514 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGT-AC-CCTACCAGCAAGATGAAGG 108168 |||||| |||||| || | || ||| || ||||| || | || ||| | ||| Sbjct 1123513 CGCTGGGAATACCATCATAATGTCACA-AC-TACTGTGACTCGGACAGGCATTAAAAAGA 1123456 Query 108169 ACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAG 108228 |||||| || || ||||||||| | ||||| || || ||||| |||| |||| Sbjct 1123455 CCCCTCCACCCATCAAAACCCCCATGTTCTCCGGGAACGCTTACTTTGTCACCTCACGAG 1123396 Query 108229 CCTTTGTCCAACATGTCTTAGACAA-CCCTAAATCCCAAAGACTGGTTGAATGGGTCAAA 108287 ||||| | || | || | || | | ||| || | | ||||||| || Sbjct 1123395 AGTTTGTGGAGTATCTATTCCAGAATCAGGAGATCTTGAA-CTTTATGGAATGGGAGAAG 1123337 Query 108288 GACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGATGC 108345 ||||| || || || || |||||| | ||||| || || ||||| ||||| | ||| Sbjct 1123336 GACACATACAGTCCAGATGAACACATGTGGGCTACACTACAGCGGATGCTCGACG--TGC 1123279 Query 108346 CTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTG-CCATCGCCAGG 108404 | || || || | || || ||||| || |||||| ||| |||| || || Sbjct 1123278 CAGGATCCAACCCACCCAACGAAAAATATCATGAGTCCGACATG-CTGTCCATTGCGAGA 1123220 Query 108405 CTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGC 108464 || || |||||| || | ||||| ||||| || | || || || || |||| ||| Sbjct 1123219 CTGGTGAAGTGGAGCTATCTAGAGGGGGATGTGAGGAAAGGAGCACCATACCCACCATGC 1123160 Query 108465 TCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT- 108523 |||| || | || | || |||| || || ||||||||| | ||||| | Sbjct 1123159 AGTGGAGGACACAGACATGCAGTGTGTGTTTATGGCGCAGGGGACCTGAAATGGATCTTG 1123100 Query 108524 --CCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGA 108568 ||||| ||| | |||| || |||||||||||||| ||||||| Sbjct 1123099 AAGCAGAAACAT--CTTCTT-GCTAACAAGTTTGACCCAGGGGTGGA 1123056 >seq45 Length=4121683 Score = 116 bits (128), Expect = 3e-21 Identities = 247/362 (68%), Gaps = 15/362 (4%) Strand=Plus/Minus Query 107700 GAAGAGCTAGA---CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAAC 107756 |||||| ||| |||||| | || || || || || ||||| | ||| | | || Sbjct 3253227 GAAGAGGAAGAGGCCTTCCCACTGGCATATTCCATTGTTGTCCACCACAAGGTGCAGAAT 3253168 Query 107757 TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGAT 107816 || || |||| |||| || | || || ||||||||| | || || |||| ||||| Sbjct 3253167 TTCGAGTGGCTCTTGCGCTCCATTTACGCTCCTCAGAACTTTTATTGCATCCATGTGGAC 3253108 Query 107817 GTGAAGTCCCCAGAG---ACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 ||| ||||||| ||| | |||| | |||| |||||| | |||||||| Sbjct 3253107 AAAAAGAGCCCAGAGTCCACTGTAAAAG---CAATCAATGCCATTGTCTCCTGCTTTGAT 3253051 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 || || ||||| |||||| || ||| |||||| ||||| |||| | || ||| Sbjct 3253050 AACGTTTTCATAGCCAGTCAGCTGGAAGAGGTGGTCTATGCTAGCTGGAGTCGTGTCCAA 3252991 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTG--CCATGGAAGTACTTAC 107991 |||||||| ||||| ||| | ||| | || || |||||| | ||||| |||||| Sbjct 3252990 GCTGACCTTAACTGCATGAAGGACCTTTACCTGA--TCAGTGATCGTTGGAAATACTTAA 3252933 Query 107992 TGAATACATGCGGGACA-GACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 | || ||| ||||| ||||| ||||| || ||||| |||||||| | ||||| Sbjct 3252932 TTAACCTGTGC-GGACAGGACTTGCCCATCAAAACCAACCTGGAGATGGTGCGTGCCCTT 3252874 Query 108051 AA 108052 || Sbjct 3252873 AA 3252872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347065400477532