Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq82245 122 7e-23 seq155987 118 8e-22 seq241 116 3e-21 seq30 105 5e-18 >seq82245 Length=399 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| ||| |||| | || ||| Sbjct 310 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCC 251 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || ||| ||||| ||||| | || ||||||||| Sbjct 250 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 191 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 190 ATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTG 131 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||| ||||| |||||| Sbjct 130 CCAGTGAGGGTCTTCACGAAGATCTGCATG 101 >seq155987 Length=309 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| ||| |||| | || ||| Sbjct 69 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCC 128 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || ||| ||||| ||||| | || || |||||| Sbjct 129 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGG 188 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 189 ATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTG 248 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||| ||||| |||||| Sbjct 249 CCAGTGAGGGTCTTCACGAAGATCTGCATG 278 >seq241 Length=1227248 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| ||| |||| | || ||| Sbjct 301099 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCC 301040 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || ||| ||||| ||||| | || || |||||| Sbjct 301039 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGG 300980 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 300979 ATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTG 300920 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| ||||| Sbjct 300919 CCAGTGAGGGTCTTCACGAAGATCTGCAT 300891 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| ||||||||||| || |||| | || ||| Sbjct 301327 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGACCATCTTCC 301268 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || ||| ||||| ||||| | || || |||||| Sbjct 301267 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGG 301208 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 301207 ATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTG 301148 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||| ||||| |||||| Sbjct 301147 CCAGTGAGGGTCTTCACGAAGATCTGCATG 301118 >seq30 Length=4849498 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||||||||||||||| || ||| | || ||||| || ||||| || || Sbjct 2502047 TCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAG 2502106 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| ||||| ||||| || || | |||||| || || ||| || ||| || | Sbjct 2502107 ATCAGACGCTGCTGGTCAGGTGGAATACCCTCTTTATCTTGAATCTTGGCCTTGACATTC 2502166 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||||||||||| ||| || ||||| || ||||| ||||||||| Sbjct 2502167 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACA 2502226 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 2502227 AAGATCTGCAT 2502237 Score = 102 bits (112), Expect = 6e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| |||||| || ||||||||||| || ||| | || |||| Sbjct 2501574 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCTTCCA 2501633 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| ||||| ||||| || || | ||||| || || || Sbjct 2501634 GCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCTTGAA 2501693 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||||||||||| |||||| ||||| | Sbjct 2501694 TCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTAC 2501753 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | ||||| |||||||||||||| ||||| Sbjct 2501754 CAGTCAGCGTCTTCACAAAGATCTGCAT 2501781 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||||||||||||||| || ||| | || ||||| || ||||| || || Sbjct 2501819 TCTTTCTGAATGTTGTAGTCAGAGAGGGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAG 2501878 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| ||||| ||||| || || | ||||| || || ||| || ||| || | Sbjct 2501879 ATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTC 2501938 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||||||||||| ||| || ||||| || ||||| ||||||||| Sbjct 2501939 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGCGTCTTCACA 2501998 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 2501999 AAGATCTGCAT 2502009 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| || |||| | || |||| ||| || || || || Sbjct 2502275 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAAG 2502334 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| ||||||||||| || || | ||||| || || ||| || ||| || | Sbjct 2502335 ATCAGACGCTGTTGGTCAGGTGGAATGCCCTCTTTATCTTGAATCTTGGCCTTGACATTC 2502394 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||||||||||| || || ||||| || ||||| ||||||||| Sbjct 2502395 TCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTACCAGTCAGCGTCTTCACA 2502454 Query 45326 AAGATTTGCATGTT 45339 ||||| ||||| || Sbjct 2502455 AAGATCTGCATCTT 2502468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393710066783878