Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq30 87.8 1e-12 seq241 82.4 6e-11 >seq30 Length=4849498 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||| || ||||||||||| | | || || ||| |||||||| Sbjct 2502263 TGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCCTCCAATTGC 2502322 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || | ||||| || || | ||| || ||||| ||| | Sbjct 2502323 TTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTGGAATGCCCTCTTTATCTTGAATCTTG 2502382 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| ||||||| |||||| || | |||||| | || || ||| Sbjct 2502383 GCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTACCAGTC 2502442 Query 18303 AATGTTTTTACAAAAATTTGCATTTTTA 18330 | || || ||||| || ||||| |||| Sbjct 2502443 AGCGTCTTCACAAAGATCTGCATCTTTA 2502470 >seq241 Length=1227248 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/222 (68%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||||| || || || |||| Sbjct 301102 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 301043 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| || |||| || || || || || || | |||||| || || Sbjct 301042 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCC 300983 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| ||||| |||| ||||||| | Sbjct 300982 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTC 300923 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT-TTTAAACT 18334 ||||| || | || || || || || |||||| ||||| || Sbjct 300922 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATTGTTTAATCT 300881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378033223988910