Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq82245 109 5e-19 seq58 109 5e-19 seq155987 105 6e-18 seq241 105 6e-18 seq202961 87.8 2e-12 >seq82245 Length=399 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || ||||| || Sbjct 101 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAG 160 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | || ||||||||||||| | || || ||||| Sbjct 161 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 220 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| | || || ||| || || Sbjct 221 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 280 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| || | || |||||||| Sbjct 281 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGG 328 >seq58 Length=3746050 Score = 109 bits (120), Expect = 5e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| || || ||||||||||| ||||| || || || ||||| | || || || Sbjct 1798185 CACCTCATCCTTACTGGTGTACTCTACGATTTCTGTGCACAGGTTGCTGGATTTGATAGT 1798126 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| |||||||||||| | |||||| | |||||| ||||||||||| || || Sbjct 1798125 GCCCAGATTCTGCTGGTTGCTTTTCCTATTGCAAGCATCCTTATAGAGCATGTAAGGAGT 1798066 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || ||||| ||| ||||| || || || ||||| Sbjct 1798065 TCCAGTCTCTGTCTGAGACTCAATAATGGCATACCACA 1798028 >seq155987 Length=309 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || ||||| || Sbjct 278 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAG 219 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | || |||||| |||||| | || || ||||| Sbjct 218 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCA 159 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| | || || ||| || || Sbjct 158 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 99 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| || | || |||||||| Sbjct 98 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGG 51 >seq241 Length=1227248 Score = 105 bits (116), Expect = 6e-18 Identities = 165/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 31186 ATCAAACA-TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || ||||| |||| || ||||| ||||| || || ||||| || |||||| | || |||| Sbjct 300883 ATTAAACAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTG 300942 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | || |||| | || | ||||| | || |||||| |||||| | || | Sbjct 300943 AGCCAAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTC 301002 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | ||||||||| | || || ||||||||||| ||| ||||||| | || || || Sbjct 301003 CTGACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCG 301062 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || ||||| || || || || || || || ||||| || | || |||||||| Sbjct 301063 ACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGG 301117 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || ||||| || Sbjct 301118 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAG 301177 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | || |||||| |||||| | || || ||||| Sbjct 301178 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCA 301237 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| | || | || || || Sbjct 301238 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTATCTGACTACAA 301297 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| || | || |||||||| Sbjct 301298 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCAGGGGCGG 301345 >seq202961 Length=268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || ||||| || Sbjct 101 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAG 160 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | || |||||| |||||| | || || ||||| Sbjct 161 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCA 220 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||| | || || ||||||||||| ||| ||||||| Sbjct 221 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGA 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444186615022560