Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq58 96.9 4e-15 seq12 93.3 5e-14 >seq58 Length=3746050 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | ||||||||||| || || |||||||| || || || || ||| Sbjct 1796381 GTGCCTGCATTGAAGAGTGTAGGAGAAGCATGAGTGAACCATTTCTCTGACAGCAGGTTG 1796322 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||||||| || | | |||||| || ||| || || |||||||| | ||| | | Sbjct 1796321 TAGGTCTCAATGGCAGCAGCAATATCCTCTTTATGGATCCCAACTGCGACTCTCATCAGC 1796262 Query 63783 ATGTGCTGAGG 63793 ||||||||||| Sbjct 1796261 ATGTGCTGAGG 1796251 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/154 (74%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || ||||| ||||| || || || ||| ||| | || || || |||||||||| Sbjct 1800552 TCCAGCCATAAAAGTGCATGCTAGTGAGCTTGCCGTAATTGGGCTCGGCAATATGGATAT 1800493 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || ||||| || ||||| || || || || |||||||| || |||| | || Sbjct 1800492 TGAGGGACTGGCTTTGGTCAATGAAAGCCCCTCTATCAGCAGCCATCTTAATGACCACCT 1800433 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA-AACTC 62265 | || | ||| ||||| | ||| ||||| ||||| Sbjct 1800432 TCTGAGAAATCTCCCACACAGTCTTATACAACTC 1800399 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | || || || ||||| || ||||| |||| || || | ||| || || | Sbjct 1795618 CACTGAAGACCTTCTTAGTCTCCTTATGCAGATTGGATACAGCGATGCGGGCTGCCAGGA 1795559 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 |||||||||| || |||| || || ||||| || | || || ||||||||||||| Sbjct 1795558 TGGCATAATCAGGGTGTTTAGTGGTGAGGGTGGCAGCGGTCTCTGCAGCCAGAGTGTCCA 1795499 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64179 ||| || || || || ||| | |||| || || || |||||||| | |||| Sbjct 1795498 GTTCAACAGTGGTCACACCACTGTATAGGCCCTGGATCACCTTCATTGTGATTT 1795445 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATG 63325 |||| ||||| ||||||||||| ||||| ||||| ||| || || || || | || || Sbjct 1797427 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGC-ATAGAACAGGTCCCTCGCCCTCTG 1797369 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || || || || ||||| || || |||||||| | | || ||| | ||||| || Sbjct 1797368 CTCTTCTTTACCAGTGTTCTTCTTCAGCTCGAGGAAGTCAAAGATGTCAAAGTGCCAAGG 1797309 Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| ||||| | ||||||| Sbjct 1797308 CTCCAGGTACATGGCAAATGCTCCAGG 1797282 >seq12 Length=6316961 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | || || || |||||||| || ||||| ||||| | ||| | Sbjct 2154511 CCTCATCTCTGCTGATAAGCTCATTGGAGAACGTGAGCCCAGGCATGAGGCCCCTCTTCT 2154570 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | ||| || || || || || |||||||| || || |||||||||| Sbjct 2154571 TTAGCCAGAAGATAGCAGCAAAAGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGG 2154630 Query 33724 CAATAAGTCTCTCTCC 33739 | | | |||||| || Sbjct 2154631 CCACCACTCTCTCACC 2154646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627585542171040