Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq10274 248 3e-61 >seq10274 Length=1328 Score = 248 bits (274), Expect = 3e-61 Identities = 609/910 (67%), Gaps = 20/910 (2%) Strand=Plus/Minus Query 1262 ACCTTCGAAGTATTGGCTCGGGAGTGGCACAAGTTGCAGAAGCCGACATGGGTCGAGAAG 1321 |||||||| | | || || ||||||||| | || | ||| | ||||||||| || Sbjct 1317 ACCTTCGAGGCGATTGCCCGCGAGTGGCACGATCTGAACAAGGGGCACTGGGTCGAGCAG 1258 Query 1322 CACGCCTCCGACGTGCTCGACTCCCTCGTGAACGATGTGTTCCCC-ATCATCGGCCAAAT 1380 ||||||| |||||| ||| ||||||| | | || || |||||| ||| ||||| || Sbjct 1257 CACGCCTTCGACGTCCTCCACTCCCTTGAGCGGGACGTCTTCCCCGATC-TCGGCACCAT 1199 Query 1381 GCCGATCCGTGACATCGATGCGCCGACGGTGCTGGGCGTTCTTCGCCTCGTCGAGCAGCG 1440 |||||| | || ||| |||| | | ||| | | ||||| || | ||||| ||| Sbjct 1198 CCCGATCAGGGATATCACTGCGGCCAACGTGATTGCTGTTCTACGTCAGATCGAGGGGCG 1139 Query 1441 CGACGCAAAGGAAACGGCGCGACGTATCCGGCAGCGGATTTCCGCCATCTTCGTCTATGG 1500 ||| || || ||||| || |||| |||||||| || || ||||||| || | Sbjct 1138 TCCCGCGGTCGAGACTGCGCGCCGCGTCCGCCAGCGGATGTCGGCGGTCTTCGTGTACGC 1079 Query 1501 CATTGCTTCCGGCCGGGCCAGCGAGGATCCGGCGGCAGTGGTGCGCGGCGCTATGGCCCC 1560 ||| || || ||||| ||| | ||||| || || | |||| || ||| || Sbjct 1078 CATCGCATCGGGCCGTGCCGAGAACGATCCAGCCGCCGCAGTGCAGAAGGCGATGAAGCC 1019 Query 1561 GATGAAGAAAGGGCGCCAGCCCGCGATCACCAATCTCGACAAGGCGCG---CGAGATGCT 1617 | ||||||| || || ||||| || |||| | || || | ||| | || ||| Sbjct 1018 GCTGAAGAAGGGACGGCAGCCGGCCGTCACGGACCTTGAACAAGCGAGGATCGTCTTGCG 959 Query 1618 GGTGGCGACATGGAAAACGCCATCGCATCCCGTCACGAAACTCGGCCTGCGCCTGCTGAC 1677 |||| || | || | |||| | ||||| || || | ||| | || || | Sbjct 958 CCGGGCGGACGAGACACCGGCCTCGC---CGGTCACCAAGCTTGCACTGAGGCTTTTGGC 902 Query 1678 GCTGACGGCGGTTCGTCCTGGCACGCTGATCTCCACGCCTTGGACCGAGCTCGACGAGGT 1737 | ||||||| | || || || |||||||| | |||| ||| | ||| |||| || | Sbjct 901 GTTGACGGCCTTACGGCCGGGAACGCTGATTGCGGCGCCCTGGGCAGAGTTCGAAGATCT 842 Query 1738 GGA--CGAGAGCGATCCGGTCTGGGTAATCCCGGCCGCCAGAATGAAGCTGCTGCTGCAG 1795 || | | | | |||| ||||||| | ||||||| | |||||||| | || ||| Sbjct 841 AGATCCCAAATC--TCCGATCTGGGTGGTGCCGGCCGAGCGGATGAAGCTCCGTCTCCAG 784 Query 1796 CACAAGGACGATGAGACGCGAGATCATCTTATTCCGCTGTCGAAGGAGGCGATGGA-GAC 1854 ||||||| ||| ||| ||||||| || | ||||| |||| |||| || | | Sbjct 783 TACAAGGATGATCAGAGCAGAGATCACCTGGTGCCGCTCTCGACCCAGGCTCGCGATGTC 724 Query 1855 GATCACAGTTCTCCGCTCGCTCACGGGCCGGGGTCCGTTCGTGCTTCCGAACGGTAGGCA 1914 || | | || ||| ||||||||| || || | | | || ||| | || Sbjct 723 CTTCGC-GCCCTTCGCAAGCTCACGGGGCGAACACCCTATCTCTTCCCCAACCAGCGACA 665 Query 1915 TGCACACAAGCCAATGTCAG--AGAATGCGCTGGGCTACCTGCTTAACCGGTCCGGCTAT 1972 ||| || || | ||| |||||||| | |||||| |||| ||||| ||||||| Sbjct 664 TGCTCATCGTCCG--GCCAGCGAGAATGCGATCGGCTACTTGCTGAACCGTGCCGGCTAC 607 Query 1973 CACCACAAGCACGTGCCACACGGCTTTCGCTCGACGTTCTCAACCGTCATGAACGAACGT 2032 || ||| |||||||| || |||| || |||| ||||| || || |||||||| || Sbjct 606 CATCACCGCCACGTGCCGCATGGCTGGCGGGCGACATTCTCGACGGTGATGAACGAGCGC 547 Query 2033 TACCCCGCA-GATCGGCAGGTTATTGACCTGATGCTGGCGCACACGCCCAAGGACAAGGT 2091 ||| ||| ||||| || | || || |||||||||||||| ||| || | ||| Sbjct 546 TACAA-GCACGATCGACACATCATCGATCTGATGCTGGCGCATGTGCCAAAAAATGCGGT 488 Query 2092 CGAAGGTGCATATAACCGTGCGGAGCACCTGGAGCGTCGTAAGGAGCTCGCGCAGATTTG 2151 || || || |||||||| || |||||||| || || || | ||||| |||||| || Sbjct 487 GGAGGGCGCCTATAACCGCGCCGAGCACCTCGACCGCCGCATCGAGCTGGCGCAGGCCTG 428 Query 2152 GGATGGTCTG 2161 || || |||| Sbjct 427 GGCTGATCTG 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182991427559448