Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 9e-16 seq58 91.5 1e-13 >seq12 Length=6316961 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || || ||||| || || || | || ||||| | || | || ||| Sbjct 2154513 TCATCTCTGCTGATAAGCTCATTGGAGAACGTGAGCCCAGGCATGAGGCCCCTCTTCTTT 2154572 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || ||||||||||| |||||||| || || |||||||||||||| ||||| || Sbjct 2154573 AGCCAGAAGATAGCAGCAAAAGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGGCC 2154632 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 2154633 ACCACTCTCTCACC 2154646 >seq58 Length=3746050 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| |||||||| | |||||| | ||| || || ||||| || || || || ||| Sbjct 1799261 ACCTGAAACTCTCCAGACAGTACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATG 1799202 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 |||||||| || | | || || | ||| || ||||||||||| ||||| | ||| || Sbjct 1799201 GACTCATTGTTGCCCAGAATCTGTGCTGTGGAAGCAGTAGGCATGGGTGCCAGTAGTAGA 1799142 Query 37258 CTATT 37262 || || Sbjct 1799141 CTGTT 1799137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466864359821920