Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq58 96.9 5e-15 seq42 95.1 2e-14 seq2 84.2 3e-11 >seq58 Length=3746050 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | ||||||||||| || || |||||||| || || || || ||| Sbjct 1796381 GTGCCTGCATTGAAGAGTGTAGGAGAAGCATGAGTGAACCATTTCTCTGACAGCAGGTTG 1796322 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || |||||||| || | | |||||| || ||| || || |||||||| | ||| | | Sbjct 1796321 TAGGTCTCAATGGCAGCAGCAATATCCTCTTTATGGATCCCAACTGCGACTCTCATCAGC 1796262 Query 66576 ATGTGCTGAGG 66586 ||||||||||| Sbjct 1796261 ATGTGCTGAGG 1796251 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/154 (74%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || ||||| ||||| || || || ||| ||| | || || || |||||||||| Sbjct 1800552 TCCAGCCATAAAAGTGCATGCTAGTGAGCTTGCCGTAATTGGGCTCGGCAATATGGATAT 1800493 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | || || ||||| || ||||| || || || || |||||||| || |||| | || Sbjct 1800492 TGAGGGACTGGCTTTGGTCAATGAAAGCCCCTCTATCAGCAGCCATCTTAATGACCACCT 1800433 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 65058 | || | ||| ||||| | ||| ||||| ||||| Sbjct 1800432 TCTGAGAAATCTCCCACACAGTCTTATACAACTC 1800399 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | || || || || || || ||||| ||||| || || | || || | | Sbjct 1795618 CACTGAAGACCTTCTTAGTCTCCTTATGCAGATTGGATACAGCGATGCGGGCTGCCAGGA 1795559 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||||||||| || |||| || || ||||| || | || || ||||||||||||| Sbjct 1795558 TGGCATAATCAGGGTGTTTAGTGGTGAGGGTGGCAGCGGTCTCTGCAGCCAGAGTGTCCA 1795499 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 ||| || || || || ||| | |||| || ||||| |||||||| | |||| Sbjct 1795498 GTTCAACAGTGGTCACACCACTGTATAGGCCCTGGATCACCTTCATTGTGATTT 1795445 >seq42 Length=4207442 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/154 (74%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 9269 GAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGA 9328 ||| || |||| || |||| ||||| ||||||||||| | ||||| || ||||| || Sbjct 2707754 GAAGAGGTTGACAATGTCCAGGTAGAGGTTGATAGAGGCCAGCACATGCTCCTCAGGTGA 2707695 Query 9329 GAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCC 9388 | || || || ||| ||||||||| ||||| ||||| |||||||| | || || || Sbjct 2707694 CAATTTGTGCATCAGTAGGTGCGTGTCGTAGATGATGAAGCCGCAGAACAGCAGCGCACC 2707635 Query 9389 AAAA---GCAGACAGGACCAGCTCCACTGTTTCA 9419 | | ||| ||| ||||||||||||| ||| Sbjct 2707634 AGCACTGGCAAACA---CCAGCTCCACTGTGTCA 2707604 >seq2 Length=9864463 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||| || || | || || || | || ||||||||||| || || | || | Sbjct 2389694 CCTCATCTCGGCTGATGAGCTCATTTGAGTATGTAAGTCCGGGCATCAGACCTCTTTTCT 2389635 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| | |||| |||||||| || || || || || ||||||||||||||||| | Sbjct 2389634 TTAACCAGTAGATGGCGGCAAATGACCCCGAGAAAAAGATGCCTTCTACTGCCGCAAATG 2389575 Query 36300 CAATAAGTCTCTCTCC 36315 | || |||||||| || Sbjct 2389574 CGATCAGTCTCTCCCC 2389559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655840252051120