Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq155987 105 7e-18 seq241 102 8e-17 seq30 102 8e-17 seq202961 91.5 1e-13 >seq155987 Length=309 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| | | ||||| || | ||| | || ||||| || || ||||| || ||| Sbjct 50 GCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 109 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||| || ||||| ||||||| | ||||| || ||||| Sbjct 110 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGG 169 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| || || | | || | |||||| | ||||| || Sbjct 170 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAAC 229 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| || | || || ||||| || ||||| Sbjct 230 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 277 >seq241 Length=1227248 Score = 102 bits (112), Expect = 8e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| | | ||||| || | ||| | || ||||| || || ||||| || ||| Sbjct 301118 GCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 301059 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||| || ||||| ||||||| | ||||| || ||||| Sbjct 301058 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGG 300999 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| || || | | || | ||||| | ||||| || Sbjct 300998 AATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAAC 300939 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTA 139770 ||||| ||| | |||||||| || | || || ||||| || ||||| | ||| Sbjct 300938 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTGTTTA 300885 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| | | ||||| || | ||| | || ||||| || || ||||| || || Sbjct 301348 TGTCCGCCCCTGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 301289 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| ||||| ||||| || ||||| ||||||| | ||||| || ||| Sbjct 301288 GATAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGA 301229 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||||||||| ||| || || | | || | |||||| | ||||| Sbjct 301228 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCA 301169 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| ||| | |||||||| || | || || ||||| || ||||| Sbjct 301168 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 301119 >seq30 Length=4849498 Score = 102 bits (112), Expect = 8e-17 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| ||| | || | || ||||| ||||| ||||| || || Sbjct 2501554 GCCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 2501613 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||||| ||||| || |||||| |||||||||| ||||| || || || Sbjct 2501614 AAGGGTACGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGG 2501673 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACTG-TGTCGGTGGGCTCC 139714 ||||| ||||| || ||| | || | || | |||| || || |||| |||||||| Sbjct 2501674 AATGCCCTCTTTATCT-TGAATCTTGGCCTTGAC-GTTCTCAATGGTGTCACTGGGCTCC 2501731 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| | ||| | ||||| || |||| ||| || || || || |||||| || Sbjct 2501732 ACCTCCAGGGTAATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATACCT 2501785 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || || ||||| |||||||| || || | |||| || | || || ||||| || || Sbjct 2501813 GTGGATTCTTTCTGAATGTTGTAGTCAGAGAGGGTGCGTCCA-TCCTCCAGCTGCTTTCC 2501871 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||||||||| ||||| || || || ||||| ||||| || ||| | || | | Sbjct 2501872 AGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCCTCTTTATCT-TGAATCTTGGCCT 2501930 Query 139687 TAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | || || |||| ||||||||||||| | ||| | ||||| || |||| || Sbjct 2501931 TGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGCG 2501990 Query 139746 TTTTTACGAATATTTGCATAGCT 139768 | || || || || |||||| || Sbjct 2501991 TCTTCACAAAGATCTGCATACCT 2502013 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || || ||||| |||||||| || || | |||| || | || || ||||| || || Sbjct 2502041 GTGGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCA-TCCTCCAGCTGCTTTCC 2502099 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||||||||| ||||| || || || || || ||||| || ||| | || | | Sbjct 2502100 AGCAAAGATCAGACGCTGCTGGTCAGGTGGAATACCCTCTTTATCT-TGAATCTTGGCCT 2502158 Query 139687 TAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | || || |||| ||||||||||||| | ||| | ||||| || |||| || Sbjct 2502159 TGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGCG 2502218 Query 139746 TTTTTACGAATATTTGCATAGCT 139768 | || || || || |||||| || Sbjct 2502219 TCTTCACAAAGATCTGCATACCT 2502241 >seq202961 Length=268 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || ||||| ||||||| | ||||| || ||||| |||||||||||| Sbjct 256 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTG 197 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||| | ||||| ||||||| ||| | Sbjct 196 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATG 137 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | || || ||||| || ||||| Sbjct 136 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494305961585600