Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 5e-13 >seq2 Length=9864463 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||| || || || || ||||| |||| | ||| ||||||| |||| ||| | Sbjct 2389694 CCTCATCTCGGCTGATGAGCTCATTTGAGTATGTAAGTCCGGGCATCAGACCTCTTTTCT 2389635 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||||||| | || || ||||||||||| || || || || || || ||||| ||||| | Sbjct 2389634 TTAACCAGTAGATGGCGGCAAATGACCCCGAGAAAAAGATGCCTTCTACTGCCGCAAATG 2389575 Query 14014 CTATTAATCGTTCTCC 14029 | || | || ||||| Sbjct 2389574 CGATCAGTC--TCTCC 2389561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478027855961200