Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq58 107 3e-18 seq2 87.8 2e-12 >seq58 Length=3746050 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | || || || ||||| || ||||| ||||| || || | ||| || || | Sbjct 1795618 CACTGAAGACCTTCTTAGTCTCCTTATGCAGATTGGATACAGCGATGCGGGCTGCCAGGA 1795559 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||||||||| || |||| || || ||||| || | ||||| ||||||||||||| Sbjct 1795558 TGGCATAATCAGGGTGTTTAGTGGTGAGGGTGGCAGCGGTCTCTGCAGCCAGAGTGTCCA 1795499 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 72934 ||| || || || || ||| | |||| || ||||| |||||||| | |||| Sbjct 1795498 GTTCAACAGTGGTCACACCACTGTATAGGCCCTGGATCACCTTCATTGTGATTT 1795445 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | ||||||||||| || || |||||||| || ||||| || ||| Sbjct 1796381 GTGCCTGCATTGAAGAGTGTAGGAGAAGCATGAGTGAACCATTTCTCTGACAGCAGGTTG 1796322 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || |||||||| || | | |||||| || ||| || || || ||||| | ||| | | Sbjct 1796321 TAGGTCTCAATGGCAGCAGCAATATCCTCTTTATGGATCCCAACTGCGACTCTCATCAGC 1796262 Query 72538 ATATGCTGAGG 72548 || |||||||| Sbjct 1796261 ATGTGCTGAGG 1796251 Score = 86.0 bits (94), Expect = 8e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 72079 ||||| ||||| ||||||||||| ||||| ||||| ||| || || || || | || | Sbjct 1797428 TACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGC-ATAGAACAGGTCCCTCGCCCTCT 1797370 Query 72080 GCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 72139 |||| || || || || ||||| || || |||||||| | | || ||| | ||||| | Sbjct 1797369 GCTCTTCTTTACCAGTGTTCTTCTTCAGCTCGAGGAAGTCAAAGATGTCAAAGTGCCAAG 1797310 Query 72140 GTTCCAAGTATATGGC 72155 | |||| ||| ||||| Sbjct 1797309 GCTCCAGGTACATGGC 1797294 >seq2 Length=9864463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||| || || | || || || | || ||||||||||| || || | || | Sbjct 2389694 CCTCATCTCGGCTGATGAGCTCATTTGAGTATGTAAGTCCGGGCATCAGACCTCTTTTCT 2389635 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| | || | |||||||| || || || ||||| ||||||||||||||||| | Sbjct 2389634 TTAACCAGTAGATGGCGGCAAATGACCCCGAGAAAAAGATGCCTTCTACTGCCGCAAATG 2389575 Query 42207 CAATAAGTCTCTCTCC 42222 | || |||||||| || Sbjct 2389574 CGATCAGTCTCTCCCC 2389559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668760699453680