Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygocentrus_20nattereri_20[refseq_20GCF_5F001682695.1_202016-07-12] 283,518 sequences; 1,285,352,492 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq30 84.2 1e-11 >seq30 Length=4849498 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/236 (68%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | |||| || | ||| | || || ||||| || || ||||| ||||| Sbjct 2502238 ACCTCCTCTGAGACGCAGGACAAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCAGA 2502297 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || | || ||||||||||| ||| ||| || | ||| || ||||| | || Sbjct 2502298 GAGGGTGCGACCATCCTCCAATTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGTGG 2502357 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||| ||||| || |||| ||| || || | | ||| ||||| |||| | Sbjct 2502358 AATGCCCTCTTTATCTTGAATCTTGGCC---TTGACATTCTCAATGGTGTCACTGGGCTC 2502414 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 || |||||||| || || || || || || || || || || || ||||| |||| Sbjct 2502415 CACCTCCAGAGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTA 2502470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317676103651164